Variant report

Variant	rs7924394
Chromosome Location	chr11:73093757-73093758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73090804..73093767-chr11:73094675..73096489,2	MCF-7	breast:
2	chr11:73054008..73056985-chr11:73091708..73094062,2	MCF-7	breast:
3	chr11:73062366..73063986-chr11:73092410..73095271,2	K562	blood:
4	chr11:73021516..73024387-chr11:73093519..73096239,3	MCF-7	breast:
5	chr11:73092651..73094843-chr11:73114830..73116410,2	K562	blood:
6	chr11:73037954..73040570-chr11:73092031..73093944,3	K562	blood:

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction
ENSG00000256448	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11823289	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12146658	0.85[AMR][1000 genomes]
rs34304845	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56045329	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56135026	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56187614	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56193465	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56834522	0.91[EUR][1000 genomes]
rs57288336	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57727431	0.83[EUR][1000 genomes]
rs58062099	0.86[AFR][1000 genomes]
rs58619954	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58658035	1.00[EUR][1000 genomes]
rs59212255	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60578483	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61527032	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592525	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7105000	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7109601	0.81[EUR][1000 genomes]
rs7119049	0.81[EUR][1000 genomes]
rs7120131	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7120967	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7128786	0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7128980	0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7931840	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7932197	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7933274	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7945984	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
2	nsv897911	chr11:73044351-73108276	Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73087800-73095200	Enhancers	Fetal Heart	heart
2	chr11:73088400-73100200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr11:73088600-73094000	Weak transcription	Fetal Lung	lung
4	chr11:73088600-73100800	Enhancers	Placenta	Placenta
5	chr11:73088800-73094000	Weak transcription	Fetal Brain Female	brain
6	chr11:73088800-73094000	Weak transcription	HSMM	muscle
7	chr11:73088800-73097800	Enhancers	Psoas Muscle	Psoas
8	chr11:73089000-73094000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:73089000-73094000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:73089000-73094000	Weak transcription	Fetal Brain Male	brain
11	chr11:73089000-73094200	Weak transcription	NH-A	brain
12	chr11:73089000-73094200	Weak transcription	NHDF-Ad	bronchial
13	chr11:73089000-73095000	Weak transcription	NHLF	lung
14	chr11:73089000-73096000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:73089000-73099600	Enhancers	A549	lung
16	chr11:73089000-73100600	Enhancers	Fetal Muscle Leg	muscle
17	chr11:73089000-73101000	Enhancers	Brain Hippocampus Middle	brain
18	chr11:73089200-73093800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:73089200-73094000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:73089200-73094800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:73089200-73095600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:73089200-73096400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:73089200-73096600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:73089200-73097200	Weak transcription	HMEC	breast
25	chr11:73089200-73097800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:73089400-73093800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:73089400-73096600	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:73089600-73095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:73089600-73096800	Weak transcription	Osteobl	bone
30	chr11:73089800-73094000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:73089800-73094200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:73089800-73096600	Enhancers	Left Ventricle	heart
33	chr11:73090000-73094400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:73090000-73096200	Weak transcription	HepG2	liver
35	chr11:73090000-73096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:73090000-73101400	Enhancers	Adipose Nuclei	Adipose
37	chr11:73090400-73093800	Weak transcription	Brain Angular Gyrus	brain
38	chr11:73090600-73099600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:73091000-73094200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:73091000-73096000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:73091000-73104200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:73091200-73094000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:73091200-73094800	Weak transcription	Pancreas	Pancrea
44	chr11:73091200-73096000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr11:73091200-73100200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr11:73091400-73094000	Weak transcription	Brain Anterior Caudate	brain
47	chr11:73091400-73100200	Enhancers	Fetal Thymus	thymus
48	chr11:73091600-73093800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:73091600-73094200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:73091600-73094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links