Variant report

Variant	rs61361454
Chromosome Location	chr11:73210815-73210816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73195983..73198212-chr11:73208729..73211318,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11823008	1.00[EUR][1000 genomes]
rs11823289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11825028	0.84[EUR][1000 genomes]
rs12290367	0.84[EUR][1000 genomes]
rs34304845	0.81[AMR][1000 genomes]
rs55727935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56045329	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56057109	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56135026	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56187614	0.81[AMR][1000 genomes]
rs56193465	0.91[EUR][1000 genomes]
rs56205113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56260110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332879	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56407713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56701090	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57288336	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58619954	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58850636	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59199852	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59212255	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59250186	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59912809	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60578483	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61236919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61527032	0.91[EUR][1000 genomes]
rs6592525	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105000	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105802	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105824	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119049	0.91[EUR][1000 genomes]
rs7120131	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7128786	0.91[EUR][1000 genomes]
rs7128980	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7131044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131397	0.84[EUR][1000 genomes]
rs7931840	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7932197	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7933274	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7936584	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945984	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7949882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
2	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
3	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:73182000-73230000	Weak transcription	Dnd41	blood
5	chr11:73199200-73211600	Weak transcription	Stomach Mucosa	stomach
6	chr11:73202400-73240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:73205000-73239600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:73205200-73219600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:73205600-73236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:73205800-73216600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:73205800-73241400	Weak transcription	Pancreas	Pancrea
12	chr11:73206000-73216800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:73206000-73222000	Weak transcription	Left Ventricle	heart
14	chr11:73206200-73224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:73206200-73232600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:73206600-73217000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:73207600-73225600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:73209400-73221600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:73209800-73212600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:73209800-73219600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:73210200-73231400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:73210400-73211000	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links