Variant report

Variant	rs7104483
Chromosome Location	chr11:73149790-73149791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11823289	0.80[ASW][hapmap]
rs11826366	0.89[AMR][1000 genomes]
rs12146658	0.99[AFR][1000 genomes]
rs12287163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55857389	0.81[AFR][1000 genomes]
rs56021202	0.83[AFR][1000 genomes]
rs56045329	0.96[AFR][1000 genomes]
rs56128908	0.86[AFR][1000 genomes]
rs56135026	0.99[AFR][1000 genomes]
rs56317898	0.87[AFR][1000 genomes]
rs58062099	1.00[AMR][1000 genomes]
rs58602796	0.87[AFR][1000 genomes]
rs59151156	0.85[AFR][1000 genomes]
rs59570366	0.82[AFR][1000 genomes]
rs61528734	0.89[AMR][1000 genomes]
rs7104108	0.89[AMR][1000 genomes]
rs7105000	0.99[AFR][1000 genomes]
rs7118920	0.87[AFR][1000 genomes]
rs7120131	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7126544	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7128786	0.81[ASW][hapmap]
rs7928848	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs7931840	0.88[AFR][1000 genomes]
rs7932197	1.00[ASW][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7933274	0.99[AFR][1000 genomes]
rs7939378	1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs7945984	1.00[ASW][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
5	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:73130800-73150000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:73131200-73149800	Weak transcription	Fetal Brain Female	brain
11	chr11:73132000-73150200	Weak transcription	HepG2	liver
12	chr11:73132600-73162600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:73137600-73150000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:73137600-73150000	Weak transcription	Fetal Stomach	stomach
15	chr11:73137800-73156800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:73138000-73149800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:73138000-73152000	Weak transcription	HSMM	muscle
18	chr11:73138000-73176800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:73138200-73157400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:73138400-73150000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:73138600-73150000	Weak transcription	Right Ventricle	heart
22	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
23	chr11:73140200-73149800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:73140800-73150000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:73141200-73156800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:73141600-73150000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:73141600-73156600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:73141600-73156800	Weak transcription	Primary T cells from cord blood	blood
29	chr11:73141600-73173600	Weak transcription	Pancreas	Pancrea
30	chr11:73141800-73149800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:73141800-73149800	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:73141800-73150200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:73141800-73150200	Weak transcription	Esophagus	oesophagus
34	chr11:73141800-73156600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:73141800-73181400	Weak transcription	Dnd41	blood
37	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
39	chr11:73142800-73150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:73147000-73149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:73147800-73149800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:73147800-73149800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:73148000-73149800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:73148000-73149800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:73148000-73150000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:73148000-73150000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:73148200-73149800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:73148200-73149800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:73148600-73150000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links