Variant report

Variant	rs7118920
Chromosome Location	chr11:73250728-73250729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12146658	0.86[AFR][1000 genomes]
rs12287163	0.88[AFR][1000 genomes]
rs55857389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56045329	0.89[AFR][1000 genomes]
rs56091126	0.89[AMR][1000 genomes]
rs56128908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135026	0.86[AFR][1000 genomes]
rs56172105	0.89[AMR][1000 genomes]
rs56317898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57960575	0.89[AMR][1000 genomes]
rs58602796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59151156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59570366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104483	0.87[AFR][1000 genomes]
rs7105000	0.86[AFR][1000 genomes]
rs7120131	0.86[AFR][1000 genomes]
rs7126544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7929493	0.89[AMR][1000 genomes]
rs7932197	0.81[AFR][1000 genomes]
rs7933274	0.86[AFR][1000 genomes]
rs7937197	0.89[AMR][1000 genomes]
rs7945984	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73240200-73252600	Weak transcription	Placenta	Placenta
2	chr11:73240400-73251600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:73240400-73253800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73240400-73254400	Weak transcription	Stomach Mucosa	stomach
5	chr11:73240600-73255400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:73241400-73251400	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
8	chr11:73243800-73263000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:73244000-73253000	Weak transcription	Psoas Muscle	Psoas
10	chr11:73246200-73256400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:73247400-73251000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:73248600-73251000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:73248600-73251000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:73248600-73251400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:73248600-73251800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:73248800-73251200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:73248800-73251600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:73248800-73251800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:73249000-73251000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:73249200-73251000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:73249200-73251000	Enhancers	Fetal Thymus	thymus
22	chr11:73249200-73251200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:73249200-73251200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:73249400-73250800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:73249400-73250800	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:73249400-73250800	Enhancers	Right Ventricle	heart
27	chr11:73249400-73251000	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:73249400-73251000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:73249400-73251000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:73249400-73251000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr11:73249400-73251000	Enhancers	Thymus	Thymus
32	chr11:73249400-73251200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:73249400-73251400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:73249400-73253400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:73249600-73250800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:73249600-73250800	Enhancers	Adipose Nuclei	Adipose
37	chr11:73249600-73251000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:73249600-73252400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:73249600-73252800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:73249600-73253800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:73249600-73266000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:73249600-73266400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:73249800-73250800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:73249800-73250800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:73249800-73250800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr11:73249800-73251000	Enhancers	Fetal Kidney	kidney
48	chr11:73249800-73251600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:73249800-73253000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:73249800-73253000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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