Variant report

Variant	rs11235775
Chromosome Location	chr11:73198087-73198088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73195983..73198212-chr11:73208729..73211318,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1002126	1.00[JPT][hapmap]
rs10898919	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235745	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235746	1.00[JPT][hapmap]
rs11235759	0.92[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235770	1.00[CHD][hapmap]
rs11235778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235809	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11820929	1.00[JPT][hapmap]
rs11821094	1.00[JPT][hapmap]
rs11823913	1.00[JPT][hapmap]
rs11823923	1.00[JPT][hapmap]
rs11824614	1.00[JPT][hapmap]
rs11825028	0.89[ASN][1000 genomes]
rs11826896	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs11826909	1.00[JPT][hapmap]
rs11828904	1.00[JPT][hapmap]
rs12269884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12275766	1.00[JPT][hapmap]
rs12276892	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12282282	1.00[JPT][hapmap]
rs12282790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12285885	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12288753	1.00[JPT][hapmap]
rs12288934	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12290367	1.00[ASN][1000 genomes]
rs12290623	1.00[JPT][hapmap]
rs12290835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894076	1.00[JPT][hapmap]
rs1938777	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2027761	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2027763	1.00[JPT][hapmap]
rs2298469	1.00[JPT][hapmap]
rs2298807	1.00[JPT][hapmap]
rs3741149	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs3825005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3933402	0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs56721062	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57181830	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57536508	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57727431	0.81[ASN][1000 genomes]
rs59809325	1.00[EUR][1000 genomes]
rs59955477	1.00[ASN][1000 genomes]
rs59991976	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60038108	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60123349	1.00[EUR][1000 genomes]
rs60349984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60674215	1.00[EUR][1000 genomes]
rs61396858	1.00[EUR][1000 genomes]
rs61613696	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592521	1.00[JPT][hapmap]
rs7101831	1.00[JPT][hapmap]
rs7102197	0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7113420	0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7114009	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7114376	1.00[JPT][hapmap]
rs7118982	1.00[JPT][hapmap]
rs7123298	1.00[JPT][hapmap]
rs7123985	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7125598	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7125978	1.00[JPT][hapmap]
rs7131383	1.00[JPT][hapmap]
rs7131397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs725103	1.00[JPT][hapmap]
rs7342205	1.00[JPT][hapmap]
rs7930880	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7934218	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7935948	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7941359	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7944099	1.00[JPT][hapmap]
rs7944346	1.00[JPT][hapmap]
rs7952686	1.00[JPT][hapmap]
rs876480	1.00[JPT][hapmap]
rs880317	1.00[JPT][hapmap]
rs947837	1.00[JPT][hapmap]
rs9888198	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9888218	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9971494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
3	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
4	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:73182000-73230000	Weak transcription	Dnd41	blood
6	chr11:73186200-73205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:73188400-73200400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:73188800-73203200	Weak transcription	Primary B cells from cord blood	blood
9	chr11:73190200-73204400	Weak transcription	Psoas Muscle	Psoas
10	chr11:73192200-73201600	Weak transcription	NHDF-Ad	bronchial
11	chr11:73192400-73202200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:73195400-73201400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:73197800-73201600	Enhancers	Liver	Liver
14	chr11:73198000-73198200	Active TSS	A549	lung
15	chr11:73198000-73199200	Enhancers	Pancreatic Islets	Pancreatic Islet

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