Variant report

Variant	rs60038108
Chromosome Location	chr11:73096015-73096016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73034172..73036801-chr11:73094770..73096669,2	MCF-7	breast:
2	chr11:73021516..73024387-chr11:73093519..73096239,3	MCF-7	breast:
3	chr11:73090804..73093767-chr11:73094675..73096489,2	MCF-7	breast:
4	chr11:73061043..73065254-chr11:73095025..73099626,5	MCF-7	breast:
5	chr11:73051653..73053765-chr11:73094533..73097113,2	MCF-7	breast:
6	chr11:73094465..73097128-chr11:73103211..73106903,3	MCF-7	breast:
7	chr11:73064939..73068033-chr11:73095872..73098913,3	K562	blood:
8	chr11:73069945..73072738-chr11:73094072..73096401,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10898919	1.00[EUR][1000 genomes]
rs11235738	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235740	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235745	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235759	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235775	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235778	1.00[EUR][1000 genomes]
rs11235779	1.00[EUR][1000 genomes]
rs12269884	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12274589	1.00[EUR][1000 genomes]
rs12282790	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12282871	1.00[EUR][1000 genomes]
rs12288934	1.00[EUR][1000 genomes]
rs12290367	0.81[ASN][1000 genomes]
rs12290835	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12293596	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13328886	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825005	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3933402	0.91[ASN][1000 genomes]
rs56721062	1.00[EUR][1000 genomes]
rs57181830	1.00[EUR][1000 genomes]
rs57536508	1.00[EUR][1000 genomes]
rs57727431	1.00[ASN][1000 genomes]
rs57792931	0.91[ASN][1000 genomes]
rs57860998	0.91[ASN][1000 genomes]
rs58342890	1.00[EUR][1000 genomes]
rs59376886	0.91[ASN][1000 genomes]
rs59809325	1.00[EUR][1000 genomes]
rs59955477	0.81[ASN][1000 genomes]
rs59991976	1.00[EUR][1000 genomes]
rs60123349	1.00[EUR][1000 genomes]
rs60349984	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60436721	0.91[ASN][1000 genomes]
rs60674215	1.00[EUR][1000 genomes]
rs60784246	1.00[AMR][1000 genomes]
rs61218298	0.91[ASN][1000 genomes]
rs61396858	1.00[EUR][1000 genomes]
rs61613696	1.00[EUR][1000 genomes]
rs7102197	0.91[ASN][1000 genomes]
rs7102423	0.91[ASN][1000 genomes]
rs7113420	0.91[ASN][1000 genomes]
rs7123300	0.91[ASN][1000 genomes]
rs7131397	0.81[ASN][1000 genomes]
rs7342152	0.91[ASN][1000 genomes]
rs7937210	0.91[ASN][1000 genomes]
rs947836	0.91[ASN][1000 genomes]
rs9888198	1.00[EUR][1000 genomes]
rs9888218	0.81[ASN][1000 genomes]
rs9971494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
2	nsv897911	chr11:73044351-73108276	Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73088400-73100200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr11:73088600-73100800	Enhancers	Placenta	Placenta
3	chr11:73088800-73097800	Enhancers	Psoas Muscle	Psoas
4	chr11:73089000-73099600	Enhancers	A549	lung
5	chr11:73089000-73100600	Enhancers	Fetal Muscle Leg	muscle
6	chr11:73089000-73101000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:73089200-73096400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:73089200-73096600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:73089200-73097200	Weak transcription	HMEC	breast
10	chr11:73089200-73097800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:73089400-73096600	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:73089600-73096800	Weak transcription	Osteobl	bone
13	chr11:73089800-73096600	Enhancers	Left Ventricle	heart
14	chr11:73090000-73096200	Weak transcription	HepG2	liver
15	chr11:73090000-73096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:73090000-73101400	Enhancers	Adipose Nuclei	Adipose
17	chr11:73090600-73099600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:73091000-73104200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:73091200-73100200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr11:73091400-73100200	Enhancers	Fetal Thymus	thymus
21	chr11:73091600-73101600	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:73092000-73098600	Enhancers	Spleen	Spleen
23	chr11:73092400-73099600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr11:73092600-73097600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:73092600-73099000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr11:73092600-73100800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:73092800-73098400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:73093000-73096400	Enhancers	K562	blood
29	chr11:73093000-73098600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:73093000-73099400	Enhancers	Duodenum Mucosa	Duodenum
31	chr11:73093000-73099600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:73093200-73097000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:73093200-73097000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:73093200-73098600	Enhancers	Hela-S3	cervix
35	chr11:73093200-73099000	Enhancers	NHEK	skin
36	chr11:73093200-73099600	Enhancers	Thymus	Thymus
37	chr11:73093400-73096200	Enhancers	Lung	lung
38	chr11:73093400-73096200	Enhancers	Small Intestine	intestine
39	chr11:73093400-73096400	Weak transcription	HSMMtube	muscle
40	chr11:73093400-73097000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr11:73093400-73097800	Enhancers	Brain Substantia Nigra	brain
42	chr11:73093600-73096800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:73093600-73097400	Enhancers	HUVEC	blood vessel
44	chr11:73093600-73097600	Enhancers	Brain Cingulate Gyrus	brain
45	chr11:73093600-73097800	Enhancers	Stomach Mucosa	stomach
46	chr11:73093600-73098000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr11:73093600-73099200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr11:73093600-73099800	Enhancers	Primary T cells from cord blood	blood
49	chr11:73093800-73096200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:73093800-73096800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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