Variant report

Variant	rs57860998
Chromosome Location	chr11:73061446-73061447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73061043..73065254-chr11:73095025..73099626,5	MCF-7	breast:
2	chr11:73060033..73062421-chr11:73088511..73090562,2	MCF-7	breast:
3	chr11:73056150..73059125-chr11:73059660..73062281,2	K562	blood:
4	chr11:73018181..73020791-chr11:73060784..73062301,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257038	Chromatin interaction
ENSG00000110237	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13328886	1.00[AMR][1000 genomes]
rs3825005	1.00[AMR][1000 genomes]
rs3933402	1.00[ASN][1000 genomes]
rs56721062	1.00[AMR][1000 genomes]
rs57181830	1.00[AMR][1000 genomes]
rs57536508	1.00[AMR][1000 genomes]
rs57727431	0.91[ASN][1000 genomes]
rs57792931	1.00[ASN][1000 genomes]
rs59376886	1.00[ASN][1000 genomes]
rs59955477	1.00[AMR][1000 genomes]
rs59991976	1.00[AMR][1000 genomes]
rs60038108	0.91[ASN][1000 genomes]
rs60349984	1.00[AMR][1000 genomes]
rs60436721	1.00[ASN][1000 genomes]
rs61218298	1.00[ASN][1000 genomes]
rs61613696	1.00[AMR][1000 genomes]
rs7102197	1.00[ASN][1000 genomes]
rs7102423	1.00[ASN][1000 genomes]
rs7113420	1.00[ASN][1000 genomes]
rs7123300	1.00[ASN][1000 genomes]
rs7342152	1.00[ASN][1000 genomes]
rs7937210	1.00[ASN][1000 genomes]
rs947836	1.00[ASN][1000 genomes]
rs9888198	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv897911	chr11:73044351-73108276	Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73046600-73061600	Weak transcription	Primary B cells from cord blood	blood
2	chr11:73046600-73075400	Weak transcription	A549	lung
3	chr11:73053800-73064400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:73053800-73065800	Weak transcription	Fetal Kidney	kidney
5	chr11:73053800-73070000	Weak transcription	HUVEC	blood vessel
6	chr11:73054400-73066600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:73054600-73081800	Strong transcription	Fetal Intestine Small	intestine
8	chr11:73054800-73061800	Weak transcription	Pancreas	Pancrea
9	chr11:73054800-73062200	Weak transcription	Liver	Liver
10	chr11:73054800-73063800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73054800-73072800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:73055000-73071000	Weak transcription	Esophagus	oesophagus
13	chr11:73055000-73072800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:73055000-73072800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:73055200-73063800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:73055800-73066800	Weak transcription	Colonic Mucosa	Colon
17	chr11:73055800-73068400	Weak transcription	NH-A	brain
18	chr11:73055800-73071800	Weak transcription	Brain Substantia Nigra	brain
19	chr11:73056000-73062000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:73056000-73072200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:73056000-73077200	Weak transcription	Right Atrium	heart
22	chr11:73056200-73061800	Strong transcription	Fetal Stomach	stomach
23	chr11:73056200-73064200	Weak transcription	NHDF-Ad	bronchial
24	chr11:73056200-73066600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:73056600-73062000	Weak transcription	Fetal Brain Male	brain
26	chr11:73056800-73061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:73057400-73062000	Strong transcription	Fetal Intestine Large	intestine
28	chr11:73057800-73061800	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:73057800-73062000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:73058000-73062200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:73058000-73071200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:73058200-73061600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:73058200-73061600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:73058200-73062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:73058200-73062000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:73058200-73062200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:73058400-73065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:73058800-73061800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:73058800-73064400	Weak transcription	HSMMtube	muscle
40	chr11:73059000-73062000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:73059000-73062000	Weak transcription	HMEC	breast
42	chr11:73059000-73074000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:73059200-73062000	Weak transcription	Brain Anterior Caudate	brain
44	chr11:73059200-73063600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:73059200-73063800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr11:73059200-73071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:73059200-73087400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:73059400-73061800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:73059400-73061800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:73059600-73061800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links