Variant report

Variant	rs61218298
Chromosome Location	chr11:73015678-73015679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73014038..73015783-chr11:73041243..73042796,2	MCF-7	breast:
2	chr11:73015428..73016151-chr17:7199662..7200382,2	MCF-7	breast:
3	chr11:72992534..72995319-chr11:73012911..73015904,2	MCF-7	breast:
4	chr11:73013244..73016848-chr11:73045967..73048517,3	MCF-7	breast:
5	chr11:73015582..73020883-chr11:73085250..73090220,9	MCF-7	breast:
6	chr11:73015113..73017609-chr11:73020294..73023247,4	K562	blood:

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction
ENSG00000257038	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3933402	1.00[ASN][1000 genomes]
rs57727431	0.91[ASN][1000 genomes]
rs57792931	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57860998	1.00[ASN][1000 genomes]
rs59376886	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60038108	0.91[ASN][1000 genomes]
rs60436721	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7102197	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7102423	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7113420	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7123300	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7342152	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937210	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs947836	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
2	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
3	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart
4	chr11:73007000-73017800	Weak transcription	Osteobl	bone
5	chr11:73008200-73017800	Weak transcription	Right Ventricle	heart
6	chr11:73009400-73017200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:73009400-73017400	Weak transcription	A549	lung
8	chr11:73010200-73017400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:73011200-73016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:73011800-73017400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:73011800-73017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:73012000-73017000	Weak transcription	Spleen	Spleen
13	chr11:73012000-73017200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:73012200-73016600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73012200-73016600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:73012200-73017400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:73012200-73017400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr11:73012200-73017400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:73012200-73017400	Weak transcription	Fetal Intestine Large	intestine
20	chr11:73012200-73017400	Weak transcription	Placenta	Placenta
21	chr11:73012200-73017400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:73012400-73016600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:73012400-73017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:73012400-73017800	Weak transcription	HSMMtube	muscle

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