Variant report

Variant	rs58342890
Chromosome Location	chr11:72950872-72950873
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RY2-1	chr11:72950020-72953380	ENSG00000260401.1

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10898919	1.00[EUR][1000 genomes]
rs11235738	1.00[EUR][1000 genomes]
rs11235740	1.00[EUR][1000 genomes]
rs11235745	1.00[EUR][1000 genomes]
rs11235759	1.00[EUR][1000 genomes]
rs12269884	1.00[EUR][1000 genomes]
rs12282790	1.00[EUR][1000 genomes]
rs12290835	1.00[EUR][1000 genomes]
rs12293596	1.00[EUR][1000 genomes]
rs13328886	1.00[EUR][1000 genomes]
rs3825005	1.00[EUR][1000 genomes]
rs60038108	1.00[EUR][1000 genomes]
rs60349984	1.00[EUR][1000 genomes]
rs60674215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1038032	chr11:72925347-72966442	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72936400-72953400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:72940600-72953400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:72941000-72951000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:72941000-72953200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:72941600-72953200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:72943800-72952200	Strong transcription	Fetal Intestine Small	intestine
7	chr11:72944000-72951600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:72945200-72953400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:72946000-72951000	Weak transcription	Gastric	stomach
10	chr11:72946200-72954200	Enhancers	Left Ventricle	heart
11	chr11:72946400-72951000	Weak transcription	Ovary	ovary
12	chr11:72946400-72953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:72946600-72951000	Weak transcription	Fetal Lung	lung
14	chr11:72946600-72951400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:72946600-72953400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:72946600-72953400	Weak transcription	Colonic Mucosa	Colon
17	chr11:72946600-72954400	Enhancers	Right Ventricle	heart
18	chr11:72947200-72952000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:72947200-72953400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:72947800-72952800	Enhancers	Psoas Muscle	Psoas
21	chr11:72947800-72953400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:72947800-72953400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:72948200-72953000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:72948400-72953400	Weak transcription	Liver	Liver
25	chr11:72948600-72951600	Genic enhancers	Esophagus	oesophagus
26	chr11:72948600-72952800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:72949000-72951000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:72949000-72952000	Enhancers	Right Atrium	heart
29	chr11:72949000-72953000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:72949200-72951000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:72949200-72951000	Weak transcription	Osteobl	bone
32	chr11:72949200-72951200	Genic enhancers	Spleen	Spleen
33	chr11:72949400-72951000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:72949400-72951000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:72949400-72951000	Weak transcription	HSMMtube	muscle
36	chr11:72949400-72951200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:72949400-72951200	Weak transcription	HUVEC	blood vessel
38	chr11:72949400-72951400	Weak transcription	HSMM	muscle
39	chr11:72949400-72951600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:72949400-72952600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:72949600-72951000	Weak transcription	Fetal Heart	heart
42	chr11:72949600-72951000	Weak transcription	NHDF-Ad	bronchial
43	chr11:72949600-72953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:72949600-72954400	Enhancers	HMEC	breast
45	chr11:72949800-72951000	Weak transcription	NHEK	skin
46	chr11:72949800-72953400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr11:72950000-72951000	Weak transcription	A549	lung
48	chr11:72950000-72951600	Enhancers	Fetal Thymus	thymus
49	chr11:72950200-72951200	Weak transcription	Placenta	Placenta
50	chr11:72950200-72951800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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