Variant report

Variant	rs60674215
Chromosome Location	chr11:73004762-73004763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72931565..72933300-chr11:73003865..73006749,2	MCF-7	breast:
2	chr11:72998786..73004272-chr11:73004336..73008265,7	MCF-7	breast:
3	chr11:73003630..73006401-chr11:73018287..73021432,3	MCF-7	breast:
4	chr11:73004033..73006704-chr11:73087002..73089869,3	K562	blood:
5	chr11:73004033..73007827-chr11:73087002..73090678,3	K562	blood:
6	chr11:73000200..73002176-chr11:73003016..73005569,2	K562	blood:
7	chr11:73004298..73006614-chr11:73044589..73046536,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction
ENSG00000257038	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000110237	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10898919	1.00[EUR][1000 genomes]
rs11235738	1.00[EUR][1000 genomes]
rs11235740	1.00[EUR][1000 genomes]
rs11235745	1.00[EUR][1000 genomes]
rs11235759	1.00[EUR][1000 genomes]
rs11235775	1.00[EUR][1000 genomes]
rs11235778	1.00[EUR][1000 genomes]
rs11235779	1.00[EUR][1000 genomes]
rs12269884	1.00[EUR][1000 genomes]
rs12274589	1.00[EUR][1000 genomes]
rs12282790	1.00[EUR][1000 genomes]
rs12282871	1.00[EUR][1000 genomes]
rs12288934	1.00[EUR][1000 genomes]
rs12290835	1.00[EUR][1000 genomes]
rs12293596	1.00[EUR][1000 genomes]
rs13328886	1.00[EUR][1000 genomes]
rs3825005	1.00[EUR][1000 genomes]
rs57536508	1.00[EUR][1000 genomes]
rs58342890	1.00[EUR][1000 genomes]
rs60038108	1.00[EUR][1000 genomes]
rs60349984	1.00[EUR][1000 genomes]
rs7108903	1.00[AMR][1000 genomes]
rs9971494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72999800-73005000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
3	chr11:73000800-73006200	Weak transcription	Right Atrium	heart
4	chr11:73000800-73007400	Weak transcription	Right Ventricle	heart
5	chr11:73000800-73008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
7	chr11:73001000-73005200	Weak transcription	NHDF-Ad	bronchial
8	chr11:73001000-73006200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:73001000-73006200	Weak transcription	Fetal Heart	heart
10	chr11:73001000-73006200	Weak transcription	Hela-S3	cervix
11	chr11:73001000-73006200	Weak transcription	HMEC	breast
12	chr11:73001000-73006200	Weak transcription	HSMM	muscle
13	chr11:73001000-73006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:73001000-73006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:73001000-73006400	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:73001000-73006400	Weak transcription	Left Ventricle	heart
17	chr11:73001200-73006200	Weak transcription	HUVEC	blood vessel
18	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:73001600-73005000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:73002000-73006400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:73002800-73007200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:73003200-73005200	Enhancers	Placenta	Placenta
23	chr11:73003400-73006800	Weak transcription	Fetal Intestine Small	intestine
24	chr11:73003400-73007000	Weak transcription	Fetal Intestine Large	intestine
25	chr11:73003600-73006200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:73003800-73005800	Weak transcription	Osteobl	bone
27	chr11:73003800-73006000	Weak transcription	A549	lung
28	chr11:73003800-73006200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:73004000-73006200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:73004000-73006200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:73004200-73006000	Weak transcription	NH-A	brain
33	chr11:73004400-73006400	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:73004400-73006800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:73004600-73006400	Weak transcription	Spleen	Spleen

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