Variant report

Variant	rs60784246
Chromosome Location	chr11:73006876-73006877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73004772..73007681-chr11:73025999..73028203,2	MCF-7	breast:
2	chr11:73006194..73007150-chr11:73071401..73072147,3	MCF-7	breast:
3	chr11:73006178..73007393-chr11:73046271..73047076,4	MCF-7	breast:
4	chr11:73002537..73005437-chr11:73005971..73007924,2	MCF-7	breast:
5	chr11:73006048..73010215-chr11:73011850..73015047,4	MCF-7	breast:
6	chr11:72998786..73004272-chr11:73004336..73008265,7	MCF-7	breast:
7	chr11:72998137..73001549-chr11:73005628..73009315,3	MCF-7	breast:
8	chr11:73003244..73004746-chr11:73006460..73008526,2	K562	blood:
9	chr11:73006542..73007167-chr11:73016992..73017707,2	MCF-7	breast:
10	chr11:73006156..73007134-chr11:73371683..73372187,2	K562	blood:
11	chr11:73006175..73007098-chr11:73046057..73046907,3	K562	blood:
12	chr11:73005626..73007527-chr11:73045532..73047567,16	MCF-7	breast:
13	chr11:73006667..73009055-chr11:73009354..73011828,3	K562	blood:
14	chr11:73006601..73007196-chr11:73071300..73072137,2	K562	blood:
15	chr11:73004033..73007827-chr11:73087002..73090678,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2298435	1.00[EUR][1000 genomes]
rs3741152	0.87[ASN][1000 genomes]
rs60038108	1.00[AMR][1000 genomes]
rs7115806	0.87[ASN][1000 genomes]
rs7125949	0.87[ASN][1000 genomes]
rs7947515	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
2	chr11:73000800-73007400	Weak transcription	Right Ventricle	heart
3	chr11:73000800-73008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
5	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:73002800-73007200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:73003400-73007000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:73005000-73007400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:73005200-73008000	Genic enhancers	Placenta	Placenta
13	chr11:73005800-73007000	Enhancers	Osteobl	bone
14	chr11:73005800-73007200	Enhancers	NHDF-Ad	bronchial
15	chr11:73006000-73007000	Enhancers	NH-A	brain
16	chr11:73006200-73007000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:73006200-73007000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:73006200-73007000	Enhancers	Stomach Smooth Muscle	stomach
19	chr11:73006200-73007000	Enhancers	HMEC	breast
20	chr11:73006200-73007000	Enhancers	HSMM	muscle
21	chr11:73006200-73007000	Enhancers	NHEK	skin
22	chr11:73006200-73007000	Enhancers	NHLF	lung
23	chr11:73006200-73007200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:73006200-73007200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:73006200-73007200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:73006200-73007200	Enhancers	Hela-S3	cervix
27	chr11:73006200-73007600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:73006400-73007000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:73006400-73007000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:73006400-73007000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:73006400-73007000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr11:73006400-73007000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:73006400-73007000	Enhancers	Colon Smooth Muscle	Colon
34	chr11:73006400-73007200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:73006400-73007200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr11:73006600-73007000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:73006600-73008000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:73006600-73008000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:73006600-73009400	Strong transcription	Spleen	Spleen
40	chr11:73006600-73011400	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:73006600-73011600	Weak transcription	HSMMtube	muscle
42	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
43	chr11:73006800-73007200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:73006800-73009400	Strong transcription	A549	lung
45	chr11:73006800-73010200	Strong transcription	Fetal Intestine Small	intestine
46	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart

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