Variant report

Variant	rs7952686
Chromosome Location	chr11:73128503-73128504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73122593..73125409-chr11:73127410..73129119,2	K562	blood:
2	chr11:73122359..73124093-chr11:73126159..73129119,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1002126	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10047442	1.00[CEU][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10793060	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10898920	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10898925	0.83[CEU][hapmap];0.95[YRI][hapmap]
rs11235729	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235738	1.00[JPT][hapmap]
rs11235743	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11235745	1.00[JPT][hapmap]
rs11235746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235759	1.00[JPT][hapmap]
rs11235770	1.00[CHB][hapmap]
rs11235775	1.00[JPT][hapmap]
rs11235809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11820786	0.82[EUR][1000 genomes]
rs11820929	1.00[JPT][hapmap]
rs11821094	1.00[JPT][hapmap]
rs11823913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11823923	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs11824614	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11826896	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs11826909	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs11828904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12269884	1.00[JPT][hapmap]
rs12274589	1.00[JPT][hapmap]
rs12275766	1.00[JPT][hapmap]
rs12276536	0.82[EUR][1000 genomes]
rs12276892	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12282282	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12282790	1.00[JPT][hapmap]
rs12285885	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12288753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12290623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12290835	1.00[JPT][hapmap]
rs12295744	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs12421053	0.94[CEU][hapmap]
rs1894076	1.00[JPT][hapmap]
rs1938777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1939382	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2027761	1.00[JPT][hapmap]
rs2027763	1.00[JPT][hapmap]
rs2298469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2298807	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2366780	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs28641751	1.00[ASN][1000 genomes]
rs3741148	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3741149	1.00[JPT][hapmap]
rs3825005	1.00[JPT][hapmap]
rs3933402	1.00[JPT][hapmap]
rs55751428	0.89[EUR][1000 genomes]
rs56801796	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6592521	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs6592523	1.00[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7101831	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs7102197	1.00[JPT][hapmap]
rs7113420	1.00[JPT][hapmap]
rs7114009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7114376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7118982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7119167	0.94[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs7122560	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7123298	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7123985	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7125598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7125978	1.00[JPT][hapmap]
rs7127171	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7129990	1.00[CHB][hapmap]
rs7131383	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7131397	1.00[JPT][hapmap]
rs725103	1.00[JPT][hapmap]
rs7342205	1.00[JPT][hapmap]
rs73542998	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7925573	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7930880	1.00[JPT][hapmap]
rs7934218	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7935204	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs7935948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7937066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7941359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7944099	1.00[JPT][hapmap]
rs7944346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7945596	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7948630	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs7950002	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7951174	0.81[ASN][1000 genomes]
rs876480	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs880317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947837	1.00[JPT][hapmap]
rs9888218	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73096200-73130200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:73098600-73132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73113600-73132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:73115200-73132200	Weak transcription	Fetal Heart	heart
7	chr11:73115200-73132400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
9	chr11:73116800-73132600	Strong transcription	Primary B cells from cord blood	blood
10	chr11:73117000-73131400	Weak transcription	A549	lung
11	chr11:73117800-73130200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:73118800-73137600	Weak transcription	Colonic Mucosa	Colon
13	chr11:73120800-73128800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:73120800-73129000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:73120800-73129000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:73120800-73129200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:73120800-73132600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:73120800-73133000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:73120800-73133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
22	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
23	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:73121000-73129000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:73121000-73133000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:73121200-73129000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:73121600-73132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:73122200-73129000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:73122200-73131800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:73122400-73129000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:73122400-73129200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr11:73122400-73129200	Weak transcription	Pancreas	Pancrea
35	chr11:73122400-73134400	Weak transcription	NHEK	skin
36	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
37	chr11:73122600-73128800	Weak transcription	Liver	Liver
38	chr11:73122600-73132600	Weak transcription	Lung	lung
39	chr11:73122600-73134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:73122800-73129200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:73122800-73129200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:73122800-73139000	Weak transcription	Spleen	Spleen
43	chr11:73122800-73149600	Weak transcription	Gastric	stomach
44	chr11:73123000-73128600	Enhancers	Osteobl	bone
45	chr11:73123000-73129000	Weak transcription	Dnd41	blood
46	chr11:73123000-73129200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:73123200-73128600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:73123200-73129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:73123200-73129200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:73123200-73129200	Weak transcription	Fetal Brain Female	brain

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