Variant report

Variant	rs73542998
Chromosome Location	chr11:73148498-73148499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10047442	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793060	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10898920	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898925	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235729	0.86[EUR][1000 genomes]
rs11235743	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11235746	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11820786	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276536	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12295744	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12421053	0.95[ASN][1000 genomes]
rs1939382	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2366780	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3741148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944845	0.90[ASN][1000 genomes]
rs55751428	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56801796	0.84[EUR][1000 genomes]
rs6592523	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7114009	0.82[AFR][1000 genomes]
rs7119167	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7122560	0.85[EUR][1000 genomes]
rs7127171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935204	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937066	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7945596	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7948630	0.95[ASN][1000 genomes]
rs7950002	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952686	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs880317	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
2	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
3	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
7	chr11:73122800-73149600	Weak transcription	Gastric	stomach
8	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
10	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:73129600-73149400	Weak transcription	Liver	Liver
12	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:73130800-73150000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:73131200-73149800	Weak transcription	Fetal Brain Female	brain
16	chr11:73132000-73150200	Weak transcription	HepG2	liver
17	chr11:73132600-73162600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:73137600-73150000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:73137600-73150000	Weak transcription	Fetal Stomach	stomach
20	chr11:73137800-73148600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:73137800-73156800	Weak transcription	Adipose Nuclei	Adipose
22	chr11:73138000-73149800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:73138000-73152000	Weak transcription	HSMM	muscle
24	chr11:73138000-73176800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:73138200-73157400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:73138400-73150000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:73138600-73150000	Weak transcription	Right Ventricle	heart
28	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
29	chr11:73139400-73149400	Weak transcription	Fetal Heart	heart
30	chr11:73140200-73149800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:73140800-73150000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:73141200-73149400	Weak transcription	Brain Angular Gyrus	brain
33	chr11:73141200-73156800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:73141600-73150000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:73141600-73156600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:73141600-73156800	Weak transcription	Primary T cells from cord blood	blood
37	chr11:73141600-73173600	Weak transcription	Pancreas	Pancrea
38	chr11:73141800-73149400	Weak transcription	Fetal Intestine Large	intestine
39	chr11:73141800-73149800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:73141800-73149800	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:73141800-73150200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:73141800-73150200	Weak transcription	Esophagus	oesophagus
43	chr11:73141800-73156600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:73141800-73181400	Weak transcription	Dnd41	blood
46	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
48	chr11:73142800-73150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:73147000-73149400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:73147000-73149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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