Variant report

Variant	rs11820786
Chromosome Location	chr11:73256528-73256529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10047442	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793060	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10898920	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898925	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235743	0.83[EUR][1000 genomes]
rs11235746	0.82[EUR][1000 genomes]
rs11823979	0.89[EUR][1000 genomes]
rs12276536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12421053	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939382	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2366780	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741148	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944845	0.90[ASN][1000 genomes]
rs55751428	0.93[ASN][1000 genomes]
rs6592523	0.81[EUR][1000 genomes]
rs7119167	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127171	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73542998	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925573	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935204	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937066	0.82[EUR][1000 genomes]
rs7944346	0.81[AFR][1000 genomes]
rs7945596	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7948630	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952686	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3424689	chr11:73254954-73257102	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
2	chr11:73243800-73263000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73249600-73266000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:73249600-73266400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:73249800-73262600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:73250000-73261800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:73250000-73262200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:73250000-73262600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:73250000-73262600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:73250000-73262800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:73250000-73265800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:73250200-73266400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:73250200-73278800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:73250800-73262200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:73250800-73265800	Weak transcription	Right Atrium	heart
18	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:73251000-73265600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
21	chr11:73251200-73258600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:73251200-73263000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:73251600-73262200	Weak transcription	Right Ventricle	heart
24	chr11:73251600-73262400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:73251600-73266000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:73252000-73258000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:73252000-73261200	Weak transcription	Dnd41	blood
28	chr11:73252200-73256800	Weak transcription	Left Ventricle	heart
29	chr11:73253600-73265800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:73253800-73262000	Weak transcription	Brain Angular Gyrus	brain
31	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:73254000-73262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:73254400-73256800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr11:73254400-73258000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:73255400-73258200	Weak transcription	GM12878-XiMat	blood
36	chr11:73255600-73259400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:73256200-73260000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr11:73256400-73256600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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