Variant report

Variant	rs10898920
Chromosome Location	chr11:73140138-73140139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002126	0.88[CEU][hapmap]
rs10047442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898925	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs11235729	0.83[EUR][1000 genomes]
rs11235743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235746	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11820786	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11820929	1.00[CHB][hapmap]
rs11821094	0.85[CHB][hapmap]
rs11823923	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs11824614	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs11826896	0.83[CEU][hapmap];0.96[YRI][hapmap]
rs11826909	0.83[CEU][hapmap];0.93[YRI][hapmap]
rs12275766	0.85[CHB][hapmap]
rs12276536	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12282282	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs12295744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs12421053	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1894076	0.85[CHB][hapmap]
rs1939382	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2027761	0.85[CHB][hapmap]
rs2027763	0.85[CHB][hapmap]
rs2298807	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs2366780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3741148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3741149	0.85[CHB][hapmap]
rs55751428	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56801796	0.81[EUR][1000 genomes]
rs6592521	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs6592523	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7101831	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs7114009	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs7119167	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7122560	0.82[EUR][1000 genomes]
rs7127171	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131383	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs725103	0.85[CHB][hapmap]
rs7342205	0.85[CHB][hapmap]
rs73542998	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7925573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7930880	0.85[CHB][hapmap]
rs7935204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937066	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7944099	0.85[CHB][hapmap]
rs7945596	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7948630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs7950002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7952686	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs876480	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs880317	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs947837	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
3	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
5	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
6	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
10	chr11:73122800-73149600	Weak transcription	Gastric	stomach
11	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:73124000-73140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
14	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:73129600-73147000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:73129600-73149400	Weak transcription	Liver	Liver
17	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:73129800-73141200	Weak transcription	Fetal Brain Male	brain
19	chr11:73130400-73141200	Weak transcription	Pancreas	Pancrea
20	chr11:73130600-73141000	Weak transcription	Thymus	Thymus
21	chr11:73130800-73140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:73130800-73150000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:73131000-73140400	Weak transcription	Fetal Intestine Large	intestine
24	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:73131200-73142800	Weak transcription	Brain Germinal Matrix	brain
26	chr11:73131200-73143200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:73131200-73149800	Weak transcription	Fetal Brain Female	brain
28	chr11:73131400-73141200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:73131600-73145600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:73131800-73140200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:73131800-73141000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:73132000-73143400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:73132000-73145200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr11:73132000-73150200	Weak transcription	HepG2	liver
35	chr11:73132600-73162600	Weak transcription	Primary B cells from cord blood	blood
36	chr11:73133000-73140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:73133000-73141000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:73133000-73146000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:73133200-73140600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:73133200-73145600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:73133200-73147000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:73134800-73141000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:73136000-73140400	Weak transcription	NHEK	skin
44	chr11:73136800-73141000	Weak transcription	Left Ventricle	heart
45	chr11:73136800-73141200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:73136800-73142600	Weak transcription	GM12878-XiMat	blood
47	chr11:73137000-73143000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:73137200-73140200	Enhancers	Osteobl	bone
49	chr11:73137600-73141400	Weak transcription	Placenta	Placenta
50	chr11:73137600-73150000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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