Variant report

Variant	rs55751428
Chromosome Location	chr11:73173902-73173903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10047442	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793060	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898920	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898925	0.93[ASN][1000 genomes]
rs11235743	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235746	0.89[EUR][1000 genomes]
rs11820786	0.93[ASN][1000 genomes]
rs12276536	0.93[ASN][1000 genomes]
rs12295744	0.90[ASN][1000 genomes]
rs12421053	0.93[ASN][1000 genomes]
rs1939382	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2366780	0.93[ASN][1000 genomes]
rs3741148	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4944845	0.83[ASN][1000 genomes]
rs6592523	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7119167	0.93[ASN][1000 genomes]
rs7127171	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73542998	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925573	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935204	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7937066	0.89[EUR][1000 genomes]
rs7945596	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7948630	0.93[ASN][1000 genomes]
rs7950002	0.93[ASN][1000 genomes]
rs7952686	0.89[EUR][1000 genomes]
rs880317	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73138000-73176800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
5	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:73141800-73181400	Weak transcription	Dnd41	blood
7	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
9	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:73150000-73175800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:73150400-73178800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:73155600-73181200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:73158200-73174400	Weak transcription	Ovary	ovary
16	chr11:73161200-73180600	Weak transcription	Fetal Lung	lung
17	chr11:73161400-73177200	Weak transcription	Left Ventricle	heart
18	chr11:73163600-73179400	Weak transcription	Lung	lung
19	chr11:73163600-73179800	Weak transcription	Aorta	Aorta
20	chr11:73163600-73180000	Weak transcription	Fetal Brain Female	brain
21	chr11:73163600-73180800	Weak transcription	Fetal Intestine Small	intestine
22	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
23	chr11:73164200-73174000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:73166400-73178600	Weak transcription	Right Atrium	heart
26	chr11:73166600-73176000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:73167000-73176000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:73167000-73176000	Weak transcription	Brain Substantia Nigra	brain
29	chr11:73167600-73176200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:73168000-73175600	Weak transcription	Brain Anterior Caudate	brain
31	chr11:73168000-73176200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
33	chr11:73170400-73185800	Weak transcription	HepG2	liver
34	chr11:73172400-73177400	Enhancers	Osteobl	bone
35	chr11:73172400-73178400	Weak transcription	Right Ventricle	heart
36	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:73173000-73174200	Weak transcription	HSMMtube	muscle
38	chr11:73173000-73175200	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr11:73173000-73177000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:73173200-73174600	Strong transcription	Primary T cells from cord blood	blood
41	chr11:73173400-73174000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr11:73173400-73174200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:73173400-73175600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:73173400-73176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:73173400-73179000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:73173600-73174000	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:73173600-73174400	Enhancers	Psoas Muscle	Psoas
48	chr11:73173600-73174800	Weak transcription	Primary B cells from cord blood	blood
49	chr11:73173600-73175000	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr11:73173600-73175200	Weak transcription	Fetal Heart	heart

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