Variant report

Variant	rs561730718
Chromosome Location	chr6:26374992-26374993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26374643..26376462-chr6:26381050..26382858,2	K562	blood:
2	chr6:26360109..26361715-chr6:26372989..26375105,2	K562	blood:
3	chr6:26214943..26217251-chr6:26374280..26376179,2	K562	blood:
4	chr6:26373307..26375855-chr6:26376435..26379484,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTN2A2-2	chr6:26372921-26375929	NONHSAT108275

Variant related genes	Relation type
ENSG00000187990	Chromatin interaction
ENSG00000168274	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv883491	chr6:26367689-26410800	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv883492	chr6:26367689-26436592	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv883493	chr6:26367689-26442786	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv883494	chr6:26367833-26442786	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv883495	chr6:26367833-26443853	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3334611	chr6:26367893-26443308	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
13	nsv883496	chr6:26369549-26413088	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv883497	chr6:26369549-26442786	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv883498	chr6:26369549-26443853	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1030863	chr6:26371006-26405990	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
17	nsv527328	chr6:26372786-26379537	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv970086	chr6:26374877-26378621	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26365800-26375200	Weak transcription	Aorta	Aorta
2	chr6:26366000-26375000	Weak transcription	Brain Anterior Caudate	brain
3	chr6:26366000-26375600	Weak transcription	Gastric	stomach
4	chr6:26366000-26382600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:26366000-26383000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:26366000-26383200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:26366000-26383200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:26366000-26383200	Weak transcription	Pancreas	Pancrea
9	chr6:26366000-26383200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:26366000-26383200	Weak transcription	HSMMtube	muscle
11	chr6:26366000-26383400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:26366200-26375000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:26366200-26375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:26366200-26375800	Weak transcription	NH-A	brain
15	chr6:26366200-26382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:26366200-26383200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:26366200-26383200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:26367000-26377800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:26367000-26383000	Weak transcription	NHEK	skin
20	chr6:26367000-26383200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:26367400-26375000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:26367800-26378600	Weak transcription	Small Intestine	intestine
23	chr6:26368800-26375200	Strong transcription	Primary B cells from cord blood	blood
24	chr6:26368800-26376000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:26369400-26375200	Strong transcription	Fetal Lung	lung
26	chr6:26369400-26377000	Strong transcription	Fetal Muscle Leg	muscle
27	chr6:26369400-26377600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr6:26369400-26378000	Strong transcription	Liver	Liver
29	chr6:26369400-26378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:26369800-26378200	Strong transcription	Thymus	Thymus
31	chr6:26369800-26383000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:26370200-26375200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:26370200-26375200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:26370200-26377800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:26370400-26377800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr6:26370400-26378200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:26370400-26383000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:26370600-26376000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:26370600-26378000	Strong transcription	Fetal Intestine Small	intestine
40	chr6:26370800-26375000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr6:26370800-26375000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:26370800-26375200	Strong transcription	Fetal Thymus	thymus
43	chr6:26370800-26376600	Strong transcription	Spleen	Spleen
44	chr6:26370800-26378000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr6:26370800-26379000	Strong transcription	Primary T cells from cord blood	blood
46	chr6:26370800-26383200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:26371000-26383200	Weak transcription	Right Ventricle	heart
48	chr6:26371400-26377600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:26371800-26378000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:26372000-26378000	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links