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Variant report
Variant
rs56177042
Chromosome Location
chr7:116245890-116245891
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:5)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:5 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
7:115847372-115857098..7:116245779-116258944
Hela-S3
cervix:
2
7:116245779-116258944..7:116754962-116765597
Hela-S3
cervix:
3
chr7:115850425..115852789-chr7:116245836..116248361,2
K562
blood:
4
7:115890993-115892266..7:116245779-116258944
GM12878
blood:
5
7:116245779-116258944..7:116434729-116454408
Hela-S3
cervix:
No data
No data
No data
Variant related genes
Relation type
ENSG00000004866
Chromatin interaction
ENSG00000135269
Chromatin interaction
ENSG00000198898
Chromatin interaction
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs73208144
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208148
1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208158
1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208175
1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208183
1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links