Variant report

Variant	rs73208144
Chromosome Location	chr7:116273654-116273655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:116273187-116274994	GM12878	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56177042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208148	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208158	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208183	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116268000-116275000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:116268800-116274200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116269600-116274000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:116270400-116273800	Enhancers	NHDF-Ad	bronchial
5	chr7:116270600-116274400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:116270800-116273800	Enhancers	Fetal Stomach	stomach
7	chr7:116270800-116273800	Enhancers	Osteobl	bone
8	chr7:116271000-116273800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:116271400-116274600	Weak transcription	Pancreas	Pancrea
10	chr7:116271600-116273800	Enhancers	Hela-S3	cervix
11	chr7:116272200-116275600	Weak transcription	Psoas Muscle	Psoas
12	chr7:116272400-116273800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:116272600-116273800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:116272600-116274600	Enhancers	HSMMtube	muscle
15	chr7:116272800-116274600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:116273000-116274000	Flanking Active TSS	GM12878-XiMat	blood
17	chr7:116273000-116274400	Enhancers	Fetal Kidney	kidney
18	chr7:116273200-116273800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:116273200-116273800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:116273200-116274200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr7:116273200-116274600	Enhancers	NH-A	brain
22	chr7:116273400-116273800	Flanking Active TSS	HMEC	breast
23	chr7:116273400-116273800	Flanking Active TSS	HSMM	muscle
24	chr7:116273400-116274000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr7:116273400-116274000	Flanking Active TSS	NHEK	skin
26	chr7:116273400-116274400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr7:116273600-116273800	Flanking Active TSS	A549	lung
28	chr7:116273600-116274000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr7:116273600-116274000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:116273600-116274000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr7:116273600-116274400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links