Variant report

Variant	rs73208158
Chromosome Location	chr7:116327659-116327660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115861595-115870968..7:116321671-116329052	GM12878	blood:
2	chr7:116325854..116329921-chr7:116334319..116337151,3	K562	blood:
3	7:115890993-115892266..7:116321671-116329052	H1-hESC	embryonic stem cell:	embryo
4	chr7:116326512..116328333-chr7:116349739..116351836,2	MCF-7	breast:
5	7:115847372-115857098..7:116321671-116329052	GM12878	blood:
6	chr7:116325777..116328615-chr7:116363362..116366242,4	MCF-7	breast:
7	7:116321671-116329052..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo
8	chr7:116326334..116328230-chr7:116412961..116415083,2	MCF-7	breast:
9	chr7:116327213..116329921-chr7:116334875..116336634,2	K562	blood:
10	chr7:116322081..116324341-chr7:116325968..116328482,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000001626	Chromatin interaction

rs_ID	r²[population]
rs56177042	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208144	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208148	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73208183	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73210117	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116314000-116331600	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:116315000-116327800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:116315400-116327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:116317800-116327800	Weak transcription	Psoas Muscle	Psoas
5	chr7:116319800-116327800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:116323000-116336200	Weak transcription	Aorta	Aorta
7	chr7:116325800-116334400	Enhancers	HMEC	breast
8	chr7:116326200-116327800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:116326200-116328200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:116326200-116335400	Weak transcription	Fetal Stomach	stomach
11	chr7:116326400-116327800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:116326600-116328200	Enhancers	Pancreas	Pancrea
13	chr7:116326600-116330200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:116326600-116330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:116326600-116331600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:116326800-116327800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr7:116326800-116328000	Enhancers	Stomach Mucosa	stomach
18	chr7:116326800-116328200	Flanking Active TSS	Liver	Liver
19	chr7:116326800-116329000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:116326800-116334200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:116327000-116327800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:116327000-116327800	Enhancers	HUVEC	blood vessel
23	chr7:116327000-116327800	Enhancers	Osteobl	bone
24	chr7:116327000-116329000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr7:116327000-116329000	Flanking Active TSS	A549	lung
26	chr7:116327000-116329200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:116327000-116329600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr7:116327000-116330800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:116327000-116340000	Weak transcription	Lung	lung
30	chr7:116327200-116327800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:116327200-116327800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:116327200-116327800	Enhancers	Hela-S3	cervix
33	chr7:116327200-116328800	Enhancers	HepG2	liver
34	chr7:116327200-116329000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:116327200-116329600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr7:116327200-116329600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:116327200-116330800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr7:116327400-116327800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:116327400-116327800	Enhancers	NHDF-Ad	bronchial
40	chr7:116327400-116339200	Weak transcription	Fetal Intestine Small	intestine
41	chr7:116327600-116327800	Enhancers	HSMM	muscle
42	chr7:116327600-116327800	Enhancers	HSMMtube	muscle
43	chr7:116327600-116327800	Enhancers	NH-A	brain
44	chr7:116327600-116327800	Enhancers	NHLF	lung
45	chr7:116327600-116328000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:116327600-116328200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:116327600-116328600	Flanking Active TSS	NHEK	skin
48	chr7:116327600-116330200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr7:116327600-116333400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links