Variant report

Variant	rs56181436
Chromosome Location	chr3:119763315-119763316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55739402	0.83[AFR][1000 genomes]
rs55849075	1.00[AFR][1000 genomes]
rs56897578	1.00[AFR][1000 genomes]
rs57028282	0.92[AFR][1000 genomes]
rs59890455	0.83[AFR][1000 genomes]
rs61091679	0.92[AFR][1000 genomes]
rs73854725	0.92[AFR][1000 genomes]
rs73854727	0.85[AFR][1000 genomes]
rs73854732	0.83[AFR][1000 genomes]
rs73854734	0.92[AFR][1000 genomes]
rs73854742	0.92[AFR][1000 genomes]
rs73854743	0.92[AFR][1000 genomes]
rs73854748	0.92[AFR][1000 genomes]
rs73854754	1.00[AFR][1000 genomes]
rs73854756	0.92[AFR][1000 genomes]
rs73854758	0.92[AFR][1000 genomes]
rs73854759	1.00[AFR][1000 genomes]
rs73854760	1.00[AFR][1000 genomes]
rs73854763	0.88[AFR][1000 genomes]
rs73854768	1.00[AFR][1000 genomes]
rs73854771	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119751800-119766800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:119757000-119765000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr3:119757200-119765800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:119757800-119769800	ZNF genes & repeats	Dnd41	blood
5	chr3:119758000-119763400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr3:119759400-119786200	Weak transcription	Hela-S3	cervix
7	chr3:119759600-119763400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:119759800-119763800	Weak transcription	Fetal Lung	lung
9	chr3:119760000-119763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:119760000-119764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:119760000-119770200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:119760000-119771200	Weak transcription	NHDF-Ad	bronchial
13	chr3:119760200-119763600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:119760200-119764200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:119760200-119764200	Weak transcription	Aorta	Aorta
16	chr3:119760200-119766400	Weak transcription	Colonic Mucosa	Colon
17	chr3:119760200-119767400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:119760200-119767400	Weak transcription	Right Ventricle	heart
19	chr3:119760200-119768200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:119760200-119768600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:119760200-119768800	Weak transcription	Ovary	ovary
22	chr3:119760200-119779400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:119760200-119805400	Weak transcription	HMEC	breast
24	chr3:119760400-119764400	Weak transcription	HepG2	liver
25	chr3:119760800-119767400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:119761200-119769200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:119761400-119764000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:119761400-119765400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:119761400-119768000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:119761600-119768200	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:119762200-119764800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
32	chr3:119762200-119765000	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr3:119762400-119764000	Strong transcription	NHEK	skin
34	chr3:119762400-119764600	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr3:119762400-119764800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:119762800-119763400	Enhancers	Brain Angular Gyrus	brain
37	chr3:119762800-119763800	Strong transcription	A549	lung
38	chr3:119762800-119764000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:119762800-119764600	ZNF genes & repeats	Fetal Thymus	thymus
40	chr3:119762800-119765000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:119763000-119764000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr3:119763000-119764000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
43	chr3:119763000-119764800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr3:119763000-119765000	ZNF genes & repeats	GM12878-XiMat	blood
45	chr3:119763200-119764000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:119763200-119764200	Weak transcription	Brain Substantia Nigra	brain
47	chr3:119763200-119764200	Weak transcription	Thymus	Thymus
48	chr3:119763200-119764400	Weak transcription	Pancreas	Pancrea
49	chr3:119763200-119765000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:119763200-119769600	Weak transcription	Gastric	stomach

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