Variant report

Variant	rs73854763
Chromosome Location	chr3:119730192-119730193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119729710..119735147-chr3:119812192..119816098,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55739402	0.87[AFR][1000 genomes]
rs55849075	0.88[AFR][1000 genomes]
rs56181436	0.88[AFR][1000 genomes]
rs56897578	0.88[AFR][1000 genomes]
rs59890455	0.87[AFR][1000 genomes]
rs73854732	0.87[AFR][1000 genomes]
rs73854754	0.88[AFR][1000 genomes]
rs73854756	0.96[AFR][1000 genomes]
rs73854758	0.96[AFR][1000 genomes]
rs73854759	0.88[AFR][1000 genomes]
rs73854760	0.88[AFR][1000 genomes]
rs73854768	0.88[AFR][1000 genomes]
rs73854771	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119693600-119732200	Weak transcription	A549	lung
2	chr3:119710200-119730800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:119712000-119732200	Weak transcription	HepG2	liver
4	chr3:119712200-119732400	Weak transcription	NHLF	lung
5	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
6	chr3:119712800-119732200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
8	chr3:119717400-119730200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:119717600-119732200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:119718200-119736800	Weak transcription	Liver	Liver
11	chr3:119720200-119731800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:119720200-119736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:119720200-119741000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:119720400-119730400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:119720400-119737200	Weak transcription	NHDF-Ad	bronchial
16	chr3:119720800-119730200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:119720800-119738600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:119721000-119731200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:119721000-119731200	Weak transcription	Fetal Lung	lung
20	chr3:119721400-119733600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:119723200-119734800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:119723200-119736200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:119723400-119730400	Weak transcription	Small Intestine	intestine
24	chr3:119723400-119731800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:119723600-119731400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:119723600-119731800	Weak transcription	Right Ventricle	heart
27	chr3:119723600-119740600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:119724000-119731200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:119724000-119736800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr3:119724000-119738200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:119724000-119741400	Weak transcription	Thymus	Thymus
32	chr3:119724200-119734600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr3:119724400-119731400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:119729200-119730400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:119729200-119730400	Weak transcription	Stomach Mucosa	stomach
36	chr3:119729200-119732600	Enhancers	Colon Smooth Muscle	Colon
37	chr3:119729400-119731200	Weak transcription	Fetal Heart	heart
38	chr3:119729600-119731000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr3:119729800-119730400	Weak transcription	Fetal Brain Male	brain
40	chr3:119729800-119730600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr3:119729800-119730600	Enhancers	Left Ventricle	heart
42	chr3:119729800-119731200	Enhancers	Adipose Nuclei	Adipose
43	chr3:119729800-119732000	Enhancers	Ovary	ovary
44	chr3:119729800-119732000	Enhancers	Psoas Muscle	Psoas
45	chr3:119729800-119733000	Enhancers	Brain Cingulate Gyrus	brain
46	chr3:119729800-119734000	Enhancers	Brain Substantia Nigra	brain
47	chr3:119730000-119730200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr3:119730000-119730600	Enhancers	Brain Hippocampus Middle	brain
49	chr3:119730000-119730600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr3:119730000-119730800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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