Variant report

Variant	rs56186224
Chromosome Location	chr10:22518956-22518957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22512596..22515154-chr10:22518221..22520150,2	K562	blood:
2	chr10:22516379..22519829-chr10:22612208..22615485,5	K562	blood:
3	chr10:22516717..22521891-chr10:22603838..22606861,9	MCF-7	breast:
4	chr10:22277614..22280212-chr10:22516665..22519232,2	K562	blood:
5	chr10:22517643..22520681-chr10:23343388..23345713,3	K562	blood:
6	chr10:22516593..22520023-chr10:22553970..22557521,4	K562	blood:
7	chr10:22518276..22521971-chr10:22606280..22610293,4	MCF-7	breast:
8	chr10:22512809..22515175-chr10:22515967..22519351,5	K562	blood:
9	chr10:22517554..22520346-chr10:22607144..22611421,6	K562	blood:
10	chr10:22517838..22520667-chr10:22608727..22611560,5	MCF-7	breast:
11	chr10:22516740..22521586-chr10:22593364..22598142,7	K562	blood:
12	chr10:22517072..22519487-chr10:22599595..22601570,2	K562	blood:
13	chr10:22518042..22521013-chr10:22521580..22524627,4	K562	blood:
14	chr10:22488525..22491217-chr10:22517571..22520488,4	K562	blood:
15	chr10:22515718..22519834-chr10:22608311..22611140,7	K562	blood:
16	chr10:22516724..22519757-chr10:22535657..22538492,3	MCF-7	breast:
17	chr10:22298573..22301355-chr10:22518207..22519896,2	K562	blood:
18	chr10:22517700..22519413-chr10:22725254..22727174,2	MCF-7	breast:
19	chr10:22517040..22520023-chr10:22539675..22542427,3	MCF-7	breast:
20	chr10:22290913..22292792-chr10:22516713..22520895,4	MCF-7	breast:
21	chr10:22517066..22519487-chr10:22600070..22601910,2	K562	blood:
22	chr10:21821957..21823704-chr10:22517499..22519628,2	K562	blood:
23	chr10:22516126..22520099-chr10:22602688..22606779,6	K562	blood:
24	chr10:22517101..22519914-chr10:22768454..22771080,2	K562	blood:
25	chr10:22292981..22295447-chr10:22516823..22519685,3	K562	blood:
26	chr10:22517953..22520233-chr10:22565238..22568123,2	K562	blood:
27	chr10:22517106..22519457-chr10:22528372..22530500,2	K562	blood:
28	chr10:22464881..22467482-chr10:22517752..22520270,2	MCF-7	breast:
29	chr10:22290370..22294143-chr10:22516445..22519951,6	K562	blood:
30	chr10:22518733..22521185-chr10:22564129..22566738,2	K562	blood:
31	chr10:22516379..22519829-chr10:22613131..22615551,4	K562	blood:
32	chr10:22517122..22518959-chr10:22629297..22631214,2	K562	blood:
33	chr10:22505985..22509886-chr10:22516839..22522194,6	K562	blood:
34	chr10:22515271..22520574-chr10:22601891..22607143,12	K562	blood:
35	chr10:22285700..22288516-chr10:22517440..22519055,2	K562	blood:
36	chr10:22504057..22509886-chr10:22511644..22520139,13	K562	blood:
37	chr10:22290370..22292926-chr10:22516445..22519930,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269897	Chromatin interaction
ENSG00000260205	Chromatin interaction
ENSG00000078403	Chromatin interaction
ENSG00000148444	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000136770	Chromatin interaction
ENSG00000227462	Chromatin interaction
ENSG00000233318	Chromatin interaction

rs_ID	r²[population]
rs16922097	0.87[AMR][1000 genomes]
rs56264992	1.00[AMR][1000 genomes]
rs72812745	1.00[AMR][1000 genomes]
rs72812756	1.00[AMR][1000 genomes]
rs72812784	1.00[AMR][1000 genomes]
rs72812786	1.00[AMR][1000 genomes]
rs72812789	1.00[AMR][1000 genomes]
rs72812790	1.00[AMR][1000 genomes]
rs72812794	1.00[AMR][1000 genomes]
rs72812795	1.00[AMR][1000 genomes]
rs72812799	1.00[AMR][1000 genomes]
rs72814804	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72814806	0.87[AMR][1000 genomes]
rs72814808	1.00[AMR][1000 genomes]
rs72814811	1.00[AMR][1000 genomes]
rs72814818	0.87[AMR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22517000-22519600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:22517000-22520200	Active TSS	Brain Anterior Caudate	brain
3	chr10:22517200-22519800	Active TSS	Brain Angular Gyrus	brain
4	chr10:22517200-22519800	Active TSS	Fetal Lung	lung
5	chr10:22517200-22520000	Active TSS	H1 Cell Line	embryonic stem cell
6	chr10:22517200-22520000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:22517200-22520000	Active TSS	Duodenum Mucosa	Duodenum
8	chr10:22517200-22520000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr10:22517200-22520000	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr10:22517200-22520000	Active TSS	HSMMtube	muscle
11	chr10:22517200-22520200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr10:22517400-22519400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:22517400-22519800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:22517400-22519800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:22517400-22519800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:22517400-22519800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:22517400-22519800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr10:22517400-22519800	Active TSS	Fetal Brain Female	brain
19	chr10:22517400-22519800	Active TSS	Fetal Intestine Small	intestine
20	chr10:22517400-22519800	Active TSS	Fetal Muscle Leg	muscle
21	chr10:22517400-22519800	Active TSS	Stomach Smooth Muscle	stomach
22	chr10:22517400-22520000	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr10:22517400-22520000	Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr10:22517400-22520000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:22517400-22520000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:22517400-22520000	Active TSS	Colon Smooth Muscle	Colon
27	chr10:22517400-22520000	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr10:22517400-22520000	Active TSS	NHDF-Ad	bronchial
29	chr10:22517400-22520000	Active TSS	NHLF	lung
30	chr10:22517400-22520200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:22517400-22520200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:22517600-22519000	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr10:22517600-22519200	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr10:22517600-22519200	Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr10:22517600-22519400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:22517600-22519400	Active TSS	Adipose Nuclei	Adipose
37	chr10:22517600-22519600	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr10:22517600-22519600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:22517600-22519600	Active TSS	Colonic Mucosa	Colon
40	chr10:22517600-22519600	ZNF genes & repeats	Fetal Brain Male	brain
41	chr10:22517600-22519600	Active TSS	Fetal Kidney	kidney
42	chr10:22517600-22519600	Active TSS	Fetal Stomach	stomach
43	chr10:22517600-22519600	Active TSS	Placenta Amnion	Placenta Amnion
44	chr10:22517600-22519600	Active TSS	Psoas Muscle	Psoas
45	chr10:22517600-22519600	Flanking Bivalent TSS/Enh	Dnd41	blood
46	chr10:22517600-22519600	Active TSS	NHEK	skin
47	chr10:22517600-22519800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:22517600-22519800	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr10:22517600-22519800	Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr10:22517600-22519800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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