Variant report
| Variant | rs72814804 |
|---|---|
| Chromosome Location | chr10:22502301-22502302 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22495548..22499375-chr10:22501130..22504416,5 | K562 | blood: | |
| 2 | chr10:22501049..22502635-chr10:22628890..22630733,2 | K562 | blood: | |
| 3 | chr10:22499848..22502632-chr10:22502756..22504450,3 | K562 | blood: | |
| 4 | chr10:22375898..22377532-chr10:22500069..22502675,2 | MCF-7 | breast: | |
| 5 | chr10:22501957..22503569-chr10:22515649..22517385,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223601 | Chromatin interaction |
| ENSG00000272366 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16922097 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56186224 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56264992 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812745 | 1.00[AMR][1000 genomes] |
| rs72812756 | 1.00[AMR][1000 genomes] |
| rs72812784 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812786 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812789 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812790 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812794 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812795 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812799 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814806 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814808 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814811 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814816 | 1.00[EUR][1000 genomes] |
| rs72814818 | 0.87[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
