Variant report
| Variant | rs72814806 |
|---|---|
| Chromosome Location | chr10:22504208-22504209 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr10:22504078-22504264 | HepG2 | liver: | n/a | chr10:22504154-22504165 |
| 2 | CEBPB | chr10:22504090-22504293 | K562 | blood: | n/a | chr10:22504154-22504165 |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22504057..22509886-chr10:22511644..22520139,13 | K562 | blood: | |
| 2 | chr10:22495548..22499375-chr10:22501130..22504416,5 | K562 | blood: | |
| 3 | chr10:22499848..22502632-chr10:22502756..22504450,3 | K562 | blood: | |
| 4 | chr10:22498560..22501493-chr10:22503632..22505534,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260205 | TF binding region |
| ENSG00000227462 | Chromatin interaction |
| ENSG00000223601 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16922097 | 1.00[EUR][1000 genomes] |
| rs56186224 | 0.87[AMR][1000 genomes] |
| rs56264992 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812745 | 0.87[AMR][1000 genomes] |
| rs72812756 | 0.87[AMR][1000 genomes] |
| rs72812784 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812786 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812789 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812790 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812794 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812795 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72812799 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814804 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814808 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814811 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72814816 | 1.00[EUR][1000 genomes] |
| rs72814818 | 0.92[AFR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
