Variant report

Variant	rs56188054
Chromosome Location	chr12:68339508-68339509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2904537	0.91[EUR][1000 genomes]
rs55637283	0.81[EUR][1000 genomes]
rs55639147	0.88[EUR][1000 genomes]
rs55640059	0.91[EUR][1000 genomes]
rs55657727	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55763957	0.88[EUR][1000 genomes]
rs55798936	0.88[EUR][1000 genomes]
rs55853686	0.81[EUR][1000 genomes]
rs55976438	0.84[EUR][1000 genomes]
rs56005528	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs56050933	0.95[EUR][1000 genomes]
rs56128793	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56137909	0.88[EUR][1000 genomes]
rs56268423	0.88[EUR][1000 genomes]
rs56363740	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs57309000	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59161212	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60801514	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61627136	0.89[EUR][1000 genomes]
rs7133527	0.82[AMR][1000 genomes]
rs74099901	0.91[EUR][1000 genomes]
rs7959936	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68336800-68340000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:68336800-68341000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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