Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2904537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55637283	0.86[EUR][1000 genomes]
rs55639147	0.93[EUR][1000 genomes]
rs55640059	0.91[EUR][1000 genomes]
rs55657727	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55763957	0.93[EUR][1000 genomes]
rs55798936	0.93[EUR][1000 genomes]
rs55853686	0.86[EUR][1000 genomes]
rs55976438	0.84[EUR][1000 genomes]
rs56050933	0.87[EUR][1000 genomes]
rs56128793	0.87[EUR][1000 genomes]
rs56137909	0.89[EUR][1000 genomes]
rs56188054	0.91[EUR][1000 genomes]
rs56197326	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56268423	0.93[EUR][1000 genomes]
rs57309000	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59161212	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60604678	0.86[AFR][1000 genomes]
rs60801514	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61627136	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7133527	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73324851	0.86[AFR][1000 genomes]
rs7959936	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68368400-68375000	Weak transcription	HSMMtube	muscle
2	chr12:68370200-68371000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:68370400-68371000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:68370400-68371000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:68370600-68370800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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