Variant report

Variant	rs73324851
Chromosome Location	chr12:68363303-68363304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs28496265	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2904537	0.86[AFR][1000 genomes]
rs2906847	1.00[EUR][1000 genomes]
rs55916709	1.00[EUR][1000 genomes]
rs56131707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56215754	1.00[EUR][1000 genomes]
rs57040075	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57309000	0.82[AFR][1000 genomes]
rs58019545	1.00[EUR][1000 genomes]
rs58123354	1.00[EUR][1000 genomes]
rs58429466	1.00[EUR][1000 genomes]
rs58627876	1.00[EUR][1000 genomes]
rs58918170	1.00[EUR][1000 genomes]
rs58973781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59155952	1.00[EUR][1000 genomes]
rs59161212	0.85[AFR][1000 genomes]
rs59781510	1.00[EUR][1000 genomes]
rs60604678	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61260239	1.00[EUR][1000 genomes]
rs7294696	1.00[EUR][1000 genomes]
rs7303763	1.00[EUR][1000 genomes]
rs7303859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322739	1.00[EUR][1000 genomes]
rs73322745	1.00[EUR][1000 genomes]
rs73322755	1.00[EUR][1000 genomes]
rs73324839	1.00[EUR][1000 genomes]
rs73324848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324853	1.00[EUR][1000 genomes]
rs73324861	1.00[EUR][1000 genomes]
rs74099862	1.00[EUR][1000 genomes]
rs74099863	1.00[EUR][1000 genomes]
rs74099901	0.86[AFR][1000 genomes]
rs7955966	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7962113	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7964651	1.00[EUR][1000 genomes]
rs7977996	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980788	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68356200-68370600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:68362400-68363600	Enhancers	Fetal Heart	heart
3	chr12:68362600-68363400	Enhancers	Fetal Muscle Leg	muscle
4	chr12:68363000-68363400	Enhancers	Left Ventricle	heart
5	chr12:68363000-68363400	Enhancers	Right Atrium	heart
6	chr12:68363000-68364000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:68363000-68364000	Enhancers	HSMMtube	muscle
8	chr12:68363200-68363600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:68363200-68363600	Enhancers	Psoas Muscle	Psoas
10	chr12:68363200-68363600	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links