Variant report
| Variant | rs7955966 |
|---|---|
| Chromosome Location | chr12:68338502-68338503 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000127334 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs28496265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2906847 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55916709 | 1.00[EUR][1000 genomes] |
| rs56131707 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56215754 | 1.00[EUR][1000 genomes] |
| rs58019545 | 1.00[EUR][1000 genomes] |
| rs58123354 | 1.00[EUR][1000 genomes] |
| rs58429466 | 1.00[EUR][1000 genomes] |
| rs58627876 | 1.00[EUR][1000 genomes] |
| rs58918170 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58973781 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59155952 | 1.00[EUR][1000 genomes] |
| rs59781510 | 1.00[EUR][1000 genomes] |
| rs61260239 | 1.00[EUR][1000 genomes] |
| rs7294696 | 1.00[EUR][1000 genomes] |
| rs7303763 | 1.00[EUR][1000 genomes] |
| rs7303859 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73322739 | 1.00[EUR][1000 genomes] |
| rs73322745 | 1.00[EUR][1000 genomes] |
| rs73322755 | 1.00[EUR][1000 genomes] |
| rs73324839 | 1.00[EUR][1000 genomes] |
| rs73324848 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73324851 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73324853 | 1.00[EUR][1000 genomes] |
| rs73324861 | 1.00[EUR][1000 genomes] |
| rs74099862 | 1.00[EUR][1000 genomes] |
| rs74099863 | 1.00[EUR][1000 genomes] |
| rs7962113 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7964651 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7977996 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7980788 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3411149 | chr12:68066948-68435533 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039638 | chr12:68293351-68399871 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv899219 | chr12:68293419-68353649 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:68334600-68339000 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 2 | chr12:68336800-68340000 | Weak transcription | Fetal Muscle Leg | muscle |
| 3 | chr12:68336800-68341000 | Weak transcription | Psoas Muscle | Psoas |
