Variant report

No.	Distal block	Cell Line	Cell type
1	chr12:67920945..67923196-chr12:68340533..68343308,2	K562	blood:
2	chr12:68041839..68044981-chr12:68337420..68341334,5	MCF-7	breast:
3	chr12:68330507..68333392-chr12:68338678..68341151,2	K562	blood:

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs28496265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2906847	1.00[EUR][1000 genomes]
rs55916709	1.00[EUR][1000 genomes]
rs56131707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56215754	1.00[EUR][1000 genomes]
rs58019545	1.00[EUR][1000 genomes]
rs58123354	1.00[EUR][1000 genomes]
rs58429466	1.00[EUR][1000 genomes]
rs58627876	1.00[EUR][1000 genomes]
rs58918170	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58973781	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59155952	1.00[EUR][1000 genomes]
rs59781510	1.00[EUR][1000 genomes]
rs61260239	1.00[EUR][1000 genomes]
rs7294696	1.00[EUR][1000 genomes]
rs7303763	1.00[EUR][1000 genomes]
rs7303859	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322739	1.00[EUR][1000 genomes]
rs73322745	1.00[EUR][1000 genomes]
rs73322755	1.00[EUR][1000 genomes]
rs73324839	1.00[EUR][1000 genomes]
rs73324848	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324851	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324853	1.00[EUR][1000 genomes]
rs73324861	1.00[EUR][1000 genomes]
rs74099862	1.00[EUR][1000 genomes]
rs74099863	1.00[EUR][1000 genomes]
rs7955966	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7962113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7964651	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7977996	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68341000-68341400	Enhancers	Psoas Muscle	Psoas

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