Variant report
| Variant | rs56268423 |
|---|---|
| Chromosome Location | chr12:68349416-68349417 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:68348695..68350706-chr12:68353935..68356300,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs2904537 | 0.93[EUR][1000 genomes] |
| rs55637283 | 0.88[EUR][1000 genomes] |
| rs55639147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55640059 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs55657727 | 0.82[EUR][1000 genomes] |
| rs55763957 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55798936 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55853686 | 0.88[EUR][1000 genomes] |
| rs55976438 | 0.90[EUR][1000 genomes] |
| rs56050933 | 0.93[EUR][1000 genomes] |
| rs56128793 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56137909 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56188054 | 0.88[EUR][1000 genomes] |
| rs57309000 | 0.93[EUR][1000 genomes] |
| rs59161212 | 0.93[EUR][1000 genomes] |
| rs60801514 | 0.93[EUR][1000 genomes] |
| rs61627136 | 0.91[EUR][1000 genomes] |
| rs74099901 | 0.93[EUR][1000 genomes] |
| rs7959936 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3411149 | chr12:68066948-68435533 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039638 | chr12:68293351-68399871 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv899219 | chr12:68293419-68353649 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:68341400-68351000 | Weak transcription | Psoas Muscle | Psoas |
