Variant report

Variant	rs56200651
Chromosome Location	chr11:72701419-72701420
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55838097	0.89[AFR][1000 genomes]
rs56283764	0.89[AFR][1000 genomes]
rs59925945	0.89[AFR][1000 genomes]
rs60812177	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72636400-72712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:72637000-72721600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:72649000-72721600	Weak transcription	Thymus	Thymus
4	chr11:72666600-72721600	Weak transcription	Lung	lung
5	chr11:72669800-72721800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:72673000-72708000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:72681800-72720200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:72682000-72710600	Weak transcription	Aorta	Aorta
9	chr11:72682800-72721600	Weak transcription	Right Ventricle	heart
10	chr11:72683000-72706600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:72684000-72712800	Weak transcription	Small Intestine	intestine
12	chr11:72684000-72721600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:72686600-72721600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:72687600-72705000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:72687600-72708600	Weak transcription	NHDF-Ad	bronchial
16	chr11:72687600-72722200	Weak transcription	NHLF	lung
17	chr11:72687600-72724200	Weak transcription	HMEC	breast
18	chr11:72688400-72706200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:72688600-72721600	Weak transcription	Brain Germinal Matrix	brain
20	chr11:72689800-72706800	Weak transcription	Esophagus	oesophagus
21	chr11:72689800-72717800	Weak transcription	Psoas Muscle	Psoas
22	chr11:72689800-72718400	Weak transcription	Fetal Intestine Small	intestine
23	chr11:72690800-72702000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:72693400-72721600	Weak transcription	Left Ventricle	heart
25	chr11:72693600-72708200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:72694400-72708000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:72695400-72705200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:72695600-72720400	Weak transcription	Adipose Nuclei	Adipose
29	chr11:72695800-72720000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:72696000-72705200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:72696000-72715400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:72696000-72720200	Weak transcription	Fetal Intestine Large	intestine
33	chr11:72696000-72720800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:72696000-72724000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:72696600-72708000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:72696800-72702000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr11:72697000-72718400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:72697000-72721600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:72697200-72705000	Weak transcription	Fetal Thymus	thymus
40	chr11:72697200-72710600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:72697200-72712600	Weak transcription	Fetal Lung	lung
42	chr11:72697200-72713400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:72697200-72720600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:72697800-72705200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:72699200-72721600	Weak transcription	HSMM	muscle
46	chr11:72699400-72705200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:72699400-72709400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:72699600-72713600	Weak transcription	Placenta	Placenta
49	chr11:72699600-72720200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:72699800-72701800	Enhancers	Fetal Heart	heart

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