Variant report

Variant	rs56283764
Chromosome Location	chr11:72759850-72759851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732893	1.00[EUR][1000 genomes]
rs10736788	1.00[EUR][1000 genomes]
rs10736789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736791	1.00[EUR][1000 genomes]
rs10751219	1.00[EUR][1000 genomes]
rs10898888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10898892	1.00[EUR][1000 genomes]
rs11235608	1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1380574	1.00[EUR][1000 genomes]
rs1380575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2060072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3903492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4373969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944015	0.91[EUR][1000 genomes]
rs4944019	1.00[EUR][1000 genomes]
rs4944814	1.00[EUR][1000 genomes]
rs4944817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55888199	1.00[EUR][1000 genomes]
rs56133665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56200651	0.89[AFR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59925945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60219481	1.00[EUR][1000 genomes]
rs60812177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60877622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592494	1.00[EUR][1000 genomes]
rs6592495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592502	1.00[EUR][1000 genomes]
rs7102424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107817	1.00[EUR][1000 genomes]
rs7115321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117786	1.00[EUR][1000 genomes]
rs7118144	1.00[EUR][1000 genomes]
rs7122566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130559	1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7395081	1.00[EUR][1000 genomes]
rs7930535	1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs898384	1.00[EUR][1000 genomes]
rs975261	1.00[EUR][1000 genomes]
rs994305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72724400-72761000	Weak transcription	HSMM	muscle
2	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
3	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
4	chr11:72741400-72765000	Weak transcription	Fetal Heart	heart
5	chr11:72745600-72761000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
7	chr11:72750600-72765800	Weak transcription	Ovary	ovary
8	chr11:72758400-72760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:72758400-72760200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr11:72758400-72760200	Enhancers	Brain Anterior Caudate	brain
11	chr11:72758400-72760400	Flanking Active TSS	GM12878-XiMat	blood
12	chr11:72758400-72773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:72758600-72760000	Enhancers	Adipose Nuclei	Adipose
14	chr11:72758600-72760000	Enhancers	Stomach Mucosa	stomach
15	chr11:72758600-72760000	Enhancers	A549	lung
16	chr11:72758600-72760200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:72758600-72760400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr11:72758600-72760400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:72759400-72760000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:72759400-72760200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr11:72759400-72760200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr11:72759400-72760400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:72759400-72765800	Weak transcription	HepG2	liver
24	chr11:72759400-72772000	Weak transcription	Fetal Intestine Small	intestine
25	chr11:72759600-72760000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:72759600-72760000	Weak transcription	Osteobl	bone
27	chr11:72759600-72760600	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:72759600-72761600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:72759600-72764000	Enhancers	Primary B cells from peripheral blood	blood
30	chr11:72759600-72771000	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:72759600-72771000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:72759800-72760000	Enhancers	Primary T cells from cord blood	blood
33	chr11:72759800-72760000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr11:72759800-72760000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:72759800-72760400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr11:72759800-72761000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:72759800-72761000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:72759800-72761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:72759800-72761800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr11:72759800-72763600	Enhancers	Primary B cells from cord blood	blood
41	chr11:72759800-72765000	Weak transcription	Fetal Lung	lung
42	chr11:72759800-72765600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:72759800-72765800	Weak transcription	Left Ventricle	heart
44	chr11:72759800-72765800	Weak transcription	Small Intestine	intestine
45	chr11:72759800-72771400	Weak transcription	HUVEC	blood vessel
46	chr11:72759800-72771600	Weak transcription	Fetal Thymus	thymus
47	chr11:72759800-72771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:72759800-72772000	Weak transcription	Aorta	Aorta
49	chr11:72759800-72772000	Weak transcription	Pancreas	Pancrea
50	chr11:72759800-72772200	Weak transcription	Brain Substantia Nigra	brain

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