Variant report

Variant	rs6592494
Chromosome Location	chr11:72562308-72562309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1025411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10732893	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736788	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736789	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10736791	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10751219	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10898888	1.00[EUR][1000 genomes]
rs10898892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235608	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099370	1.00[EUR][1000 genomes]
rs1380574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1380575	1.00[EUR][1000 genomes]
rs1864651	0.82[AFR][1000 genomes]
rs2060072	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2365906	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3903492	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4373969	1.00[EUR][1000 genomes]
rs4594026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4944015	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4944019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944814	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944817	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[EUR][1000 genomes]
rs55888199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56133665	1.00[EUR][1000 genomes]
rs56283764	1.00[EUR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[EUR][1000 genomes]
rs59925945	1.00[EUR][1000 genomes]
rs60219481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812177	1.00[EUR][1000 genomes]
rs60877622	1.00[EUR][1000 genomes]
rs6592495	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6592502	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102424	1.00[EUR][1000 genomes]
rs7115321	1.00[EUR][1000 genomes]
rs7118144	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122566	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7130559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7395081	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs898384	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs975261	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs994305	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
4	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
6	chr11:72551200-72563000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:72552000-72567000	Weak transcription	NH-A	brain
8	chr11:72552200-72575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:72552200-72580400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:72552400-72597400	Weak transcription	HMEC	breast
11	chr11:72552800-72578000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:72553400-72567000	Weak transcription	HUVEC	blood vessel
13	chr11:72553600-72576000	Weak transcription	NHEK	skin
14	chr11:72554400-72564000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:72554400-72567000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:72554400-72567000	Weak transcription	Adipose Nuclei	Adipose
17	chr11:72554400-72567200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:72554400-72574200	Weak transcription	Aorta	Aorta
19	chr11:72554400-72576000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:72554600-72563200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:72554600-72567000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:72554600-72567600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:72554600-72567800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:72554600-72568000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:72554600-72570600	Weak transcription	Colonic Mucosa	Colon
26	chr11:72554600-72577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:72554600-72577800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:72554600-72580400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
31	chr11:72554800-72567200	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:72554800-72578000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:72554800-72578200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:72555400-72568000	Weak transcription	NHLF	lung
35	chr11:72555600-72567200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:72555600-72567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:72555600-72567800	Weak transcription	Fetal Brain Male	brain
38	chr11:72555600-72575200	Weak transcription	Right Ventricle	heart
39	chr11:72555600-72586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:72555800-72567000	Weak transcription	Brain Anterior Caudate	brain
41	chr11:72555800-72567000	Weak transcription	Fetal Intestine Small	intestine
42	chr11:72555800-72574000	Weak transcription	Left Ventricle	heart
43	chr11:72555800-72580600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:72555800-72595600	Weak transcription	Thymus	Thymus
45	chr11:72556000-72567000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:72556000-72586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:72556200-72566600	Weak transcription	Fetal Heart	heart
48	chr11:72556200-72567000	Weak transcription	Fetal Stomach	stomach
49	chr11:72556200-72572800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:72556200-72576600	Weak transcription	Fetal Kidney	kidney

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