The 2.0 version of rSNPBase

Variant report

Variant rs55838097
Chromosome Location chr11:72745978-72745979
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:72722600-72746400 Weak transcription Rectal Smooth Muscle rectum
2 chr11:72724400-72761000 Weak transcription HSMM muscle
3 chr11:72730800-72751000 Weak transcription HSMMtube muscle
4 chr11:72734200-72755200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr11:72736600-72750200 Weak transcription Psoas Muscle Psoas
6 chr11:72739200-72759200 Weak transcription Aorta Aorta
7 chr11:72739400-72746200 Weak transcription Gastric stomach
8 chr11:72739400-72748200 Weak transcription Right Ventricle heart
9 chr11:72739400-72748400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr11:72739400-72753000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr11:72739400-72765800 Weak transcription Spleen Spleen
12 chr11:72739600-72746000 Weak transcription Fetal Lung lung
13 chr11:72739600-72757800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr11:72739600-72759200 Weak transcription Osteobl bone
15 chr11:72740000-72748400 Weak transcription HepG2 liver
16 chr11:72740000-72753200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr11:72740000-72757400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr11:72740000-72758400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr11:72740000-72758800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr11:72740000-72759200 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr11:72740000-72771800 Weak transcription Fetal Stomach stomach
22 chr11:72740800-72746200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr11:72740800-72746200 Weak transcription Left Ventricle heart
24 chr11:72740800-72749400 Weak transcription Fetal Intestine Large intestine
25 chr11:72740800-72750200 Weak transcription Ovary ovary
26 chr11:72740800-72751000 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr11:72740800-72758400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr11:72741400-72746400 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr11:72741400-72749400 Weak transcription Primary hematopoietic stem cells blood
30 chr11:72741400-72749400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr11:72741400-72750200 Weak transcription Lung lung
32 chr11:72741400-72765000 Weak transcription Fetal Heart heart
33 chr11:72741600-72746200 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr11:72741600-72749400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr11:72741600-72749800 Weak transcription Primary monocytes fromperipheralblood blood
36 chr11:72742000-72757800 Weak transcription Primary neutrophils fromperipheralblood blood
37 chr11:72743200-72746800 Enhancers Primary T helper cells fromperipheralblood blood
38 chr11:72743400-72746600 Enhancers Primary T helper naive cells fromperipheralblood blood
39 chr11:72743400-72747200 Enhancers Primary T killer naive cells fromperipheralblood blood
40 chr11:72743600-72747200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr11:72743800-72758800 Weak transcription HUVEC blood vessel
42 chr11:72744000-72750200 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr11:72744200-72759200 Weak transcription Pancreas Pancrea
44 chr11:72744400-72746600 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr11:72744400-72747600 Enhancers Dnd41 blood
46 chr11:72744600-72758600 Weak transcription Fetal Intestine Small intestine
47 chr11:72745200-72746000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
48 chr11:72745200-72746200 Enhancers Primary B cells from cord blood blood
49 chr11:72745200-72746200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
50 chr11:72745200-72746600 Genic enhancers Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015