Variant report

Variant	rs7107817
Chromosome Location	chr11:72849206-72849207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72794791..72796457-chr11:72847518..72849670,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1025411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10732893	1.00[EUR][1000 genomes]
rs10736788	1.00[EUR][1000 genomes]
rs10736789	1.00[EUR][1000 genomes]
rs10736791	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10898888	1.00[EUR][1000 genomes]
rs10898892	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	1.00[EUR][1000 genomes]
rs1380574	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1380575	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2060072	1.00[EUR][1000 genomes]
rs3903492	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4373969	1.00[EUR][1000 genomes]
rs4594026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4944019	1.00[EUR][1000 genomes]
rs4944814	1.00[EUR][1000 genomes]
rs4944817	1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[EUR][1000 genomes]
rs55888199	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56133665	1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56283764	1.00[EUR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59925945	1.00[EUR][1000 genomes]
rs60219481	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60812177	1.00[EUR][1000 genomes]
rs60877622	1.00[EUR][1000 genomes]
rs6592495	1.00[EUR][1000 genomes]
rs6592502	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7102424	1.00[EUR][1000 genomes]
rs7115321	1.00[EUR][1000 genomes]
rs7117786	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7118144	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7122566	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7130559	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7930535	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs898384	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs975261	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs994305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72793600-72850600	Weak transcription	NH-A	brain
2	chr11:72806800-72851000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:72811000-72851600	Weak transcription	Pancreas	Pancrea
4	chr11:72822400-72850200	Weak transcription	A549	lung
5	chr11:72823600-72850200	Weak transcription	NHLF	lung
6	chr11:72825400-72851400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:72825600-72851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:72826000-72851600	Weak transcription	Gastric	stomach
9	chr11:72826200-72850800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:72826200-72851200	Weak transcription	Hela-S3	cervix
11	chr11:72826400-72850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:72826400-72850800	Weak transcription	Fetal Brain Male	brain
13	chr11:72826400-72851600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:72828200-72850600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:72832400-72851400	Weak transcription	Psoas Muscle	Psoas
16	chr11:72836200-72851400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:72836600-72850800	Weak transcription	K562	blood
18	chr11:72836800-72850600	Weak transcription	Brain Germinal Matrix	brain
19	chr11:72836800-72851400	Weak transcription	Colonic Mucosa	Colon
20	chr11:72837200-72851400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:72838200-72850600	Weak transcription	Right Atrium	heart
22	chr11:72838200-72851400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:72838400-72849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:72838600-72850400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:72838600-72851000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:72838600-72851000	Weak transcription	Fetal Brain Female	brain
27	chr11:72838800-72850000	Weak transcription	NHDF-Ad	bronchial
28	chr11:72838800-72850200	Weak transcription	Fetal Kidney	kidney
29	chr11:72838800-72850400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:72838800-72850800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:72838800-72850800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:72839800-72850800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:72840000-72850600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:72840600-72851600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:72840800-72851400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:72841000-72851400	Weak transcription	Lung	lung
37	chr11:72842800-72850200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:72842800-72850800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr11:72843000-72850400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:72843600-72851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:72843600-72851400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:72843800-72851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:72845000-72849800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:72845400-72850600	Genic enhancers	Primary B cells from peripheral blood	blood
45	chr11:72845800-72850800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:72846000-72851400	Weak transcription	Thymus	Thymus
47	chr11:72846400-72851000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
48	chr11:72846800-72850600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:72847000-72850600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:72847000-72850600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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