Variant report

Variant	rs60877622
Chromosome Location	chr11:72737523-72737524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1025411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732893	1.00[EUR][1000 genomes]
rs10736788	1.00[EUR][1000 genomes]
rs10736789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736791	1.00[EUR][1000 genomes]
rs10751219	1.00[EUR][1000 genomes]
rs10898888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10898892	1.00[EUR][1000 genomes]
rs11235608	1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1380574	1.00[EUR][1000 genomes]
rs1380575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2060072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3903492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4373969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944015	0.91[EUR][1000 genomes]
rs4944019	1.00[EUR][1000 genomes]
rs4944814	1.00[EUR][1000 genomes]
rs4944817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55888199	1.00[EUR][1000 genomes]
rs56133665	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56283764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316448	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57731198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59925945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60219481	1.00[EUR][1000 genomes]
rs60812177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61424140	0.92[AFR][1000 genomes]
rs6592494	1.00[EUR][1000 genomes]
rs6592495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592502	1.00[EUR][1000 genomes]
rs7102424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107817	1.00[EUR][1000 genomes]
rs7115321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117220	0.87[AFR][1000 genomes]
rs7117786	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7118144	1.00[EUR][1000 genomes]
rs7122566	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130559	1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7395081	1.00[EUR][1000 genomes]
rs7930535	1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs898384	1.00[EUR][1000 genomes]
rs975261	1.00[EUR][1000 genomes]
rs994305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
3	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:72722800-72737800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:72722800-72738600	Weak transcription	Fetal Stomach	stomach
7	chr11:72722800-72738600	Weak transcription	Fetal Thymus	thymus
8	chr11:72722800-72738600	Weak transcription	Left Ventricle	heart
9	chr11:72722800-72738800	Weak transcription	Thymus	Thymus
10	chr11:72723000-72737800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:72723000-72739000	Weak transcription	Right Ventricle	heart
12	chr11:72723600-72738000	Weak transcription	NHLF	lung
13	chr11:72724400-72739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:72724400-72761000	Weak transcription	HSMM	muscle
15	chr11:72728400-72739000	Weak transcription	Gastric	stomach
16	chr11:72730400-72738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:72730800-72751000	Weak transcription	HSMMtube	muscle
18	chr11:72732400-72741600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:72732800-72744600	ZNF genes & repeats	GM12878-XiMat	blood
20	chr11:72733800-72739800	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr11:72734200-72755200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:72734600-72741000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr11:72735600-72740800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr11:72736200-72738200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:72736600-72738000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:72736600-72750200	Weak transcription	Psoas Muscle	Psoas
27	chr11:72737000-72740800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr11:72737200-72739600	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr11:72737400-72739000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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