Variant report

Variant	rs7117220
Chromosome Location	chr11:72731676-72731677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1380575	0.87[AFR][1000 genomes]
rs56316448	0.87[AFR][1000 genomes]
rs57731198	0.83[AFR][1000 genomes]
rs60877622	0.87[AFR][1000 genomes]
rs61424140	0.84[AFR][1000 genomes]
rs7117786	0.81[AFR][1000 genomes]
rs7951614	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
3	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:72722800-72737800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:72722800-72738600	Weak transcription	Fetal Stomach	stomach
7	chr11:72722800-72738600	Weak transcription	Fetal Thymus	thymus
8	chr11:72722800-72738600	Weak transcription	Left Ventricle	heart
9	chr11:72722800-72738800	Weak transcription	Thymus	Thymus
10	chr11:72723000-72734600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:72723000-72735400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:72723000-72737800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:72723000-72739000	Weak transcription	Right Ventricle	heart
14	chr11:72723600-72738000	Weak transcription	NHLF	lung
15	chr11:72724400-72734800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:72724400-72739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:72724400-72761000	Weak transcription	HSMM	muscle
18	chr11:72725600-72732400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:72725800-72731800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:72726400-72734800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:72728400-72739000	Weak transcription	Gastric	stomach
22	chr11:72728600-72732400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:72730400-72738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:72730800-72732800	Weak transcription	GM12878-XiMat	blood
25	chr11:72730800-72751000	Weak transcription	HSMMtube	muscle
26	chr11:72731400-72732000	Weak transcription	Fetal Intestine Small	intestine
27	chr11:72731600-72732000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:72731600-72733000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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