Variant report

Variant	rs7117786
Chromosome Location	chr11:72845119-72845120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72844087..72848256-chr11:72851941..72854991,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1025411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10732893	1.00[EUR][1000 genomes]
rs10736788	1.00[EUR][1000 genomes]
rs10736789	1.00[EUR][1000 genomes]
rs10736791	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10898888	1.00[EUR][1000 genomes]
rs10898892	1.00[EUR][1000 genomes]
rs11235608	1.00[EUR][1000 genomes]
rs11824394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099370	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1380574	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1380575	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2060072	1.00[EUR][1000 genomes]
rs3903492	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4373969	1.00[EUR][1000 genomes]
rs4594026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4944019	1.00[EUR][1000 genomes]
rs4944814	1.00[EUR][1000 genomes]
rs4944817	1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[EUR][1000 genomes]
rs55888199	1.00[EUR][1000 genomes]
rs56133665	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56154220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56283764	1.00[EUR][1000 genomes]
rs56316448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57731198	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58192366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59925945	1.00[EUR][1000 genomes]
rs60219481	1.00[EUR][1000 genomes]
rs60812177	1.00[EUR][1000 genomes]
rs60877622	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61424140	0.97[AFR][1000 genomes]
rs6592495	1.00[EUR][1000 genomes]
rs6592502	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7102424	1.00[EUR][1000 genomes]
rs7107817	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7115321	1.00[EUR][1000 genomes]
rs7117220	0.81[AFR][1000 genomes]
rs7118144	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7122566	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7130559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72984941	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72984946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72984947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72984948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930535	1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs898384	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs975261	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs994305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72793600-72850600	Weak transcription	NH-A	brain
2	chr11:72806800-72851000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:72807000-72847800	Weak transcription	Small Intestine	intestine
4	chr11:72811000-72851600	Weak transcription	Pancreas	Pancrea
5	chr11:72822400-72850200	Weak transcription	A549	lung
6	chr11:72823200-72848000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:72823600-72850200	Weak transcription	NHLF	lung
8	chr11:72825400-72851400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:72825600-72851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:72826000-72851600	Weak transcription	Gastric	stomach
11	chr11:72826200-72845200	Weak transcription	Thymus	Thymus
12	chr11:72826200-72850800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:72826200-72851200	Weak transcription	Hela-S3	cervix
14	chr11:72826400-72845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:72826400-72845200	Weak transcription	Spleen	Spleen
16	chr11:72826400-72848800	Weak transcription	HSMMtube	muscle
17	chr11:72826400-72850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:72826400-72850800	Weak transcription	Fetal Brain Male	brain
19	chr11:72826400-72851600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:72826800-72848800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:72828200-72850600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:72830000-72848400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:72832400-72851400	Weak transcription	Psoas Muscle	Psoas
24	chr11:72836200-72851400	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:72836400-72847600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:72836600-72850800	Weak transcription	K562	blood
27	chr11:72836800-72846200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:72836800-72848000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:72836800-72848600	Weak transcription	Right Ventricle	heart
30	chr11:72836800-72850600	Weak transcription	Brain Germinal Matrix	brain
31	chr11:72836800-72851400	Weak transcription	Colonic Mucosa	Colon
32	chr11:72837000-72845800	Strong transcription	Dnd41	blood
33	chr11:72837200-72851400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:72837400-72846200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:72837800-72848600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:72838000-72847200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:72838000-72848400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:72838200-72850600	Weak transcription	Right Atrium	heart
39	chr11:72838200-72851400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:72838400-72849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:72838600-72845200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:72838600-72846200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:72838600-72846600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:72838600-72846800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:72838600-72848200	Weak transcription	Brain Angular Gyrus	brain
46	chr11:72838600-72848200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:72838600-72848600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:72838600-72850400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:72838600-72851000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:72838600-72851000	Weak transcription	Fetal Brain Female	brain

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