Variant report

Variant	rs898384
Chromosome Location	chr11:72696649-72696650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72689559..72692269-chr11:72695713..72698108,2	K562	blood:
2	chr11:72694533..72697472-chr11:72703924..72706266,2	K562	blood:
3	chr11:72682058..72684979-chr11:72694471..72696981,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1025411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10732893	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736788	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736789	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10736791	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10751219	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10898888	1.00[EUR][1000 genomes]
rs10898892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235608	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	1.00[EUR][1000 genomes]
rs1380574	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1380575	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2060072	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2365906	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3903492	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4373969	1.00[EUR][1000 genomes]
rs4594026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4944015	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4944019	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944814	1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944817	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs555773	0.83[AFR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[EUR][1000 genomes]
rs55888199	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56133665	1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56283764	1.00[EUR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59925945	1.00[EUR][1000 genomes]
rs60219481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812177	1.00[EUR][1000 genomes]
rs60877622	1.00[EUR][1000 genomes]
rs6592494	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592495	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6592502	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102424	1.00[EUR][1000 genomes]
rs7107817	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7115321	1.00[EUR][1000 genomes]
rs7117786	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7118144	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122566	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7130559	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7395081	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs975261	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs994305	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72636400-72712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:72637000-72721600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:72649000-72721600	Weak transcription	Thymus	Thymus
4	chr11:72666600-72721600	Weak transcription	Lung	lung
5	chr11:72667000-72700600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:72669800-72721800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:72673000-72708000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:72675200-72700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:72675600-72696800	Weak transcription	Fetal Kidney	kidney
10	chr11:72675800-72700800	Weak transcription	Spleen	Spleen
11	chr11:72681800-72720200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:72682000-72701400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:72682000-72710600	Weak transcription	Aorta	Aorta
14	chr11:72682800-72697200	Weak transcription	K562	blood
15	chr11:72682800-72700800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:72682800-72721600	Weak transcription	Right Ventricle	heart
17	chr11:72683000-72706600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:72684000-72701000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:72684000-72712800	Weak transcription	Small Intestine	intestine
20	chr11:72684000-72721600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:72685600-72696800	Weak transcription	Ovary	ovary
22	chr11:72686600-72721600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:72687400-72697200	Weak transcription	Hela-S3	cervix
24	chr11:72687400-72697400	Weak transcription	NHEK	skin
25	chr11:72687400-72700600	Weak transcription	NH-A	brain
26	chr11:72687600-72700800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:72687600-72705000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:72687600-72708600	Weak transcription	NHDF-Ad	bronchial
29	chr11:72687600-72722200	Weak transcription	NHLF	lung
30	chr11:72687600-72724200	Weak transcription	HMEC	breast
31	chr11:72688400-72706200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:72688600-72721600	Weak transcription	Brain Germinal Matrix	brain
33	chr11:72689600-72700400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:72689800-72700800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:72689800-72701000	Strong transcription	Dnd41	blood
36	chr11:72689800-72706800	Weak transcription	Esophagus	oesophagus
37	chr11:72689800-72717800	Weak transcription	Psoas Muscle	Psoas
38	chr11:72689800-72718400	Weak transcription	Fetal Intestine Small	intestine
39	chr11:72690000-72697000	Weak transcription	Fetal Stomach	stomach
40	chr11:72690600-72699400	Strong transcription	Liver	Liver
41	chr11:72690800-72702000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:72691200-72700400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:72691800-72698400	Weak transcription	HSMM	muscle
44	chr11:72692600-72697200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:72692600-72701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:72692800-72700200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:72693000-72697800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:72693200-72701400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:72693400-72699600	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:72693400-72721600	Weak transcription	Left Ventricle	heart

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