The 2.0 version of rSNPBase

Variant report

Variant rs55888199
Chromosome Location chr11:72709851-72709852
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:72636400-72712600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr11:72637000-72721600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr11:72649000-72721600 Weak transcription Thymus Thymus
4 chr11:72666600-72721600 Weak transcription Lung lung
5 chr11:72669800-72721800 Weak transcription Stomach Smooth Muscle stomach
6 chr11:72681800-72720200 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr11:72682000-72710600 Weak transcription Aorta Aorta
8 chr11:72682800-72721600 Weak transcription Right Ventricle heart
9 chr11:72684000-72712800 Weak transcription Small Intestine intestine
10 chr11:72684000-72721600 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr11:72686600-72721600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr11:72687600-72722200 Weak transcription NHLF lung
13 chr11:72687600-72724200 Weak transcription HMEC breast
14 chr11:72688600-72721600 Weak transcription Brain Germinal Matrix brain
15 chr11:72689800-72717800 Weak transcription Psoas Muscle Psoas
16 chr11:72689800-72718400 Weak transcription Fetal Intestine Small intestine
17 chr11:72693400-72721600 Weak transcription Left Ventricle heart
18 chr11:72695600-72720400 Weak transcription Adipose Nuclei Adipose
19 chr11:72695800-72720000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr11:72696000-72715400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr11:72696000-72720200 Weak transcription Fetal Intestine Large intestine
22 chr11:72696000-72720800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr11:72696000-72724000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr11:72697000-72718400 Weak transcription Fetal Muscle Leg muscle
25 chr11:72697000-72721600 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr11:72697200-72710600 Weak transcription Muscle Satellite Cultured Cells --
27 chr11:72697200-72712600 Weak transcription Fetal Lung lung
28 chr11:72697200-72713400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr11:72697200-72720600 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr11:72699200-72721600 Weak transcription HSMM muscle
31 chr11:72699600-72713600 Weak transcription Placenta Placenta
32 chr11:72699600-72720200 Weak transcription Primary T cells fromperipheralblood blood
33 chr11:72700000-72720800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr11:72700400-72719800 Weak transcription Primary T cells from cord blood blood
35 chr11:72700600-72718800 Weak transcription Fetal Brain Female brain
36 chr11:72700600-72720600 Weak transcription Fetal Brain Male brain
37 chr11:72700800-72711800 Weak transcription Primary hematopoietic stem cells blood
38 chr11:72700800-72720400 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr11:72701000-72712600 Weak transcription A549 lung
40 chr11:72701000-72720200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr11:72701000-72721600 Weak transcription Pancreas Pancrea
42 chr11:72701000-72727200 Weak transcription HUVEC blood vessel
43 chr11:72701200-72710800 Weak transcription Osteobl bone
44 chr11:72701200-72721600 Weak transcription Ovary ovary
45 chr11:72701400-72710600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr11:72701400-72710800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr11:72701400-72713800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr11:72701600-72712800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr11:72705400-72710800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr11:72705400-72721600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015