Variant report

Variant	rs7946019
Chromosome Location	chr11:72776346-72776347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RY2-5	chr11:72776077-72776433	expReg_chr11_7601_+

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1025411	1.00[EUR][1000 genomes]
rs10732893	1.00[EUR][1000 genomes]
rs10736788	1.00[EUR][1000 genomes]
rs10736789	1.00[EUR][1000 genomes]
rs10736791	1.00[EUR][1000 genomes]
rs10751219	1.00[EUR][1000 genomes]
rs10898888	1.00[EUR][1000 genomes]
rs10898892	1.00[EUR][1000 genomes]
rs11235608	1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	1.00[EUR][1000 genomes]
rs1380574	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1380575	1.00[EUR][1000 genomes]
rs2060072	1.00[EUR][1000 genomes]
rs2365906	1.00[EUR][1000 genomes]
rs3903492	1.00[EUR][1000 genomes]
rs4373969	1.00[EUR][1000 genomes]
rs4594026	1.00[EUR][1000 genomes]
rs4944015	0.91[EUR][1000 genomes]
rs4944019	1.00[EUR][1000 genomes]
rs4944814	1.00[EUR][1000 genomes]
rs4944817	1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[EUR][1000 genomes]
rs55888199	1.00[EUR][1000 genomes]
rs56133665	1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56283764	1.00[EUR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59925945	1.00[EUR][1000 genomes]
rs60219481	1.00[EUR][1000 genomes]
rs60812177	1.00[EUR][1000 genomes]
rs60877622	1.00[EUR][1000 genomes]
rs6592494	1.00[EUR][1000 genomes]
rs6592495	1.00[EUR][1000 genomes]
rs6592502	1.00[EUR][1000 genomes]
rs7102424	1.00[EUR][1000 genomes]
rs7107817	1.00[EUR][1000 genomes]
rs7115321	1.00[EUR][1000 genomes]
rs7117786	1.00[EUR][1000 genomes]
rs7118144	1.00[EUR][1000 genomes]
rs7122566	1.00[EUR][1000 genomes]
rs7130559	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7395081	1.00[EUR][1000 genomes]
rs7930535	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7951614	1.00[EUR][1000 genomes]
rs898384	1.00[EUR][1000 genomes]
rs975261	1.00[EUR][1000 genomes]
rs994305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:72762400-72783600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:72768000-72783200	Weak transcription	Liver	Liver
6	chr11:72768800-72797000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:72770800-72788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:72771000-72777000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:72771200-72783800	Weak transcription	Hela-S3	cervix
10	chr11:72771400-72778000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:72771600-72799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:72772000-72783000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:72772400-72777000	Weak transcription	Ovary	ovary
14	chr11:72772400-72777000	Weak transcription	Spleen	Spleen
15	chr11:72772400-72783200	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:72772600-72777600	Weak transcription	Fetal Intestine Small	intestine
17	chr11:72772600-72780800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:72772600-72781800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:72772600-72782200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:72772600-72783000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:72772800-72783200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:72773000-72810800	Weak transcription	Fetal Stomach	stomach
23	chr11:72773400-72791000	Weak transcription	Fetal Thymus	thymus
24	chr11:72773400-72810400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:72773600-72783600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:72773800-72778600	Weak transcription	Primary B cells from cord blood	blood
27	chr11:72774800-72777400	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:72775200-72777200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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