Variant report

Variant	rs6592495
Chromosome Location	chr11:72623405-72623406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1025411	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732893	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10736788	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10736789	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736791	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10751219	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10898888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10898892	1.00[EUR][1000 genomes]
rs11235608	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11824394	1.00[EUR][1000 genomes]
rs12099370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1380574	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1380575	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2060072	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365906	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3903492	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4373969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594026	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs479093	1.00[CHD][hapmap]
rs4944015	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4944019	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs4944814	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs4944817	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55787543	1.00[EUR][1000 genomes]
rs55838097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55888199	1.00[EUR][1000 genomes]
rs56133665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56154220	1.00[EUR][1000 genomes]
rs56283764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316448	1.00[EUR][1000 genomes]
rs57731198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58192366	1.00[EUR][1000 genomes]
rs59090297	0.84[AFR][1000 genomes]
rs59925945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60219481	1.00[EUR][1000 genomes]
rs60812177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60877622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592494	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6592502	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7102424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107817	1.00[EUR][1000 genomes]
rs7115321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117786	1.00[EUR][1000 genomes]
rs7118144	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7122566	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130559	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs72984941	0.83[EUR][1000 genomes]
rs72984946	1.00[EUR][1000 genomes]
rs72984947	1.00[EUR][1000 genomes]
rs72984948	1.00[EUR][1000 genomes]
rs7395081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7930535	1.00[EUR][1000 genomes]
rs7946019	1.00[EUR][1000 genomes]
rs7951614	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs898384	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs975261	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs994305	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72577200-72651600	Weak transcription	Gastric	stomach
2	chr11:72597200-72634200	Weak transcription	NHLF	lung
3	chr11:72599400-72632400	Weak transcription	HUVEC	blood vessel
4	chr11:72600800-72623600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:72600800-72632600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:72600800-72653200	Weak transcription	Lung	lung
7	chr11:72601000-72624000	Weak transcription	Thymus	Thymus
8	chr11:72601000-72636800	Weak transcription	Spleen	Spleen
9	chr11:72601000-72641200	Weak transcription	HSMMtube	muscle
10	chr11:72601200-72623600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:72601200-72636000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:72601400-72632400	Weak transcription	Ovary	ovary
13	chr11:72601800-72636000	Weak transcription	Osteobl	bone
14	chr11:72602200-72636800	Weak transcription	Left Ventricle	heart
15	chr11:72605600-72624000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:72607000-72643000	Weak transcription	HSMM	muscle
17	chr11:72608800-72623600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:72612400-72649000	Weak transcription	Aorta	Aorta
19	chr11:72614200-72640400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:72615800-72631400	Weak transcription	Liver	Liver
21	chr11:72618200-72623800	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:72618400-72636000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:72619600-72641400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:72620200-72636800	Weak transcription	Right Atrium	heart
25	chr11:72621000-72651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:72621600-72627200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:72622000-72623600	ZNF genes & repeats	Fetal Heart	heart
28	chr11:72622000-72624800	ZNF genes & repeats	GM12878-XiMat	blood
29	chr11:72622000-72625000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr11:72622200-72625000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr11:72622200-72625800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr11:72622400-72627000	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr11:72622600-72624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:72622600-72627200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr11:72622800-72623600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:72623000-72624000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:72623000-72624200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:72623200-72623800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:72623200-72624000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:72623200-72624400	ZNF genes & repeats	HepG2	liver
41	chr11:72623200-72624600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr11:72623400-72623600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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