Variant report

Variant	rs56201166
Chromosome Location	chr6:132575608-132575609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17061129	1.00[AFR][1000 genomes]
rs55672631	1.00[AFR][1000 genomes]
rs56384202	0.93[AFR][1000 genomes]
rs56737819	1.00[AFR][1000 genomes]
rs57294553	0.97[AFR][1000 genomes]
rs58428348	0.97[AFR][1000 genomes]
rs59235375	1.00[AFR][1000 genomes]
rs73779009	0.93[AFR][1000 genomes]
rs73779010	0.93[AFR][1000 genomes]
rs73781464	0.87[AFR][1000 genomes]
rs73781467	0.90[AFR][1000 genomes]
rs73781474	0.90[AFR][1000 genomes]
rs73781475	0.93[AFR][1000 genomes]
rs73781477	1.00[AFR][1000 genomes]
rs73781491	1.00[AFR][1000 genomes]
rs73781492	1.00[AFR][1000 genomes]
rs73781494	0.91[AFR][1000 genomes]
rs73781495	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132573400-132575800	Enhancers	NHDF-Ad	bronchial
3	chr6:132575400-132588400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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