Variant report

Variant	rs73781475
Chromosome Location	chr6:132567803-132567804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17061129	0.93[AFR][1000 genomes]
rs55672631	0.93[AFR][1000 genomes]
rs56201166	0.93[AFR][1000 genomes]
rs56384202	0.93[AFR][1000 genomes]
rs56737819	0.93[AFR][1000 genomes]
rs57294553	0.97[AFR][1000 genomes]
rs58428348	0.90[AFR][1000 genomes]
rs59235375	0.93[AFR][1000 genomes]
rs73779009	0.93[AFR][1000 genomes]
rs73779010	0.93[AFR][1000 genomes]
rs73781464	0.93[AFR][1000 genomes]
rs73781467	0.97[AFR][1000 genomes]
rs73781474	0.96[AFR][1000 genomes]
rs73781477	0.93[AFR][1000 genomes]
rs73781491	0.93[AFR][1000 genomes]
rs73781492	0.93[AFR][1000 genomes]
rs73781494	0.85[AFR][1000 genomes]
rs73781495	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132564200-132568200	Weak transcription	NHLF	lung
2	chr6:132567400-132568600	Enhancers	Fetal Brain Male	brain
3	chr6:132567400-132569000	Enhancers	Ovary	ovary
4	chr6:132567400-132569200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:132567600-132568800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:132567600-132568800	Enhancers	NHEK	skin
7	chr6:132567600-132573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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