Variant report

Variant	rs56202729
Chromosome Location	chr4:103274665-103274666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103264616..103268649-chr4:103270354..103274790,5	K562	blood:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10516492	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10516493	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11097775	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11097777	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11097779	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11931217	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499248	0.85[ASN][1000 genomes]
rs12508086	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12508121	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1381893	0.86[ASN][1000 genomes]
rs1462943	0.86[ASN][1000 genomes]
rs1462945	0.87[EUR][1000 genomes]
rs17032552	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2054393	0.86[ASN][1000 genomes]
rs34663993	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34835832	0.82[ASN][1000 genomes]
rs34927061	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35651507	0.92[EUR][1000 genomes]
rs4146611	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4356914	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4594728	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4699012	0.84[ASN][1000 genomes]
rs4699020	0.92[EUR][1000 genomes]
rs55801262	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56202913	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56344531	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62328212	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62329487	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844796	0.83[ASN][1000 genomes]
rs6856314	0.92[EUR][1000 genomes]
rs7695249	0.93[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103268200-103277000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:103271800-103274800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:103272600-103284200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:103273000-103277000	Weak transcription	K562	blood
5	chr4:103274000-103274800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr4:103274200-103275000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:103274200-103283400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:103274600-103274800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr4:103274600-103276000	Weak transcription	Fetal Intestine Large	intestine

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