Variant report

Variant	rs11931217
Chromosome Location	chr4:103271888-103271889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr4:103271780-103272209	K562	blood:	n/a	n/a
2	ATF1	chr4:103271854-103272050	K562	blood:	n/a	n/a
3	POLR2A	chr4:103271878-103272085	K562	blood:	n/a	n/a
4	CEBPD	chr4:103271843-103272230	K562	blood:	n/a	n/a
5	TEAD4	chr4:103271770-103272183	K562	blood:	n/a	n/a
6	TEAD4	chr4:103271746-103272224	K562	blood:	n/a	n/a
7	TAL1	chr4:103271808-103272186	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:103265265..103268309-chr4:103269283..103272314,4	K562	blood:
2	chr4:103264616..103268649-chr4:103270354..103274790,5	K562	blood:
3	chr4:103270130..103272142-chr4:103273536..103275827,2	MCF-7	breast:

No data

Variant related genes	Relation type
RN7SL728P	TF binding region
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516492	0.92[EUR][1000 genomes]
rs10516493	0.91[EUR][1000 genomes]
rs11097775	0.91[EUR][1000 genomes]
rs11097777	0.88[EUR][1000 genomes]
rs11097779	0.88[EUR][1000 genomes]
rs12499248	0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs12508086	0.88[EUR][1000 genomes]
rs12508121	0.88[EUR][1000 genomes]
rs1381893	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1462943	0.87[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1462945	0.86[EUR][1000 genomes]
rs17032552	0.90[EUR][1000 genomes]
rs2054393	0.87[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs34663993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34835832	0.82[ASN][1000 genomes]
rs34927061	0.92[EUR][1000 genomes]
rs35651507	0.92[EUR][1000 genomes]
rs4146611	0.90[EUR][1000 genomes]
rs4356914	0.92[EUR][1000 genomes]
rs4557261	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs4594728	0.92[EUR][1000 genomes]
rs4699012	0.87[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs4699020	0.90[EUR][1000 genomes]
rs55801262	0.88[EUR][1000 genomes]
rs56202729	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56202913	0.92[EUR][1000 genomes]
rs56344531	0.88[EUR][1000 genomes]
rs62328212	0.92[EUR][1000 genomes]
rs62329487	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844796	0.83[ASN][1000 genomes]
rs6856314	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7436937	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs7695249	0.92[EUR][1000 genomes]
rs985989	0.82[CHB][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103267200-103273000	Weak transcription	Colonic Mucosa	Colon
2	chr4:103267200-103273800	Weak transcription	Ovary	ovary
3	chr4:103268200-103273400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:103268200-103277000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:103270800-103273200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:103271000-103272000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:103271400-103273000	Enhancers	K562	blood
8	chr4:103271800-103274800	Active TSS	Rectal Mucosa Donor 29	rectum

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