Variant report

Variant	rs4557261
Chromosome Location	chr4:103267798-103267799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10019247	0.82[EUR][1000 genomes]
rs10461136	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097776	0.91[EUR][1000 genomes]
rs11097780	0.82[EUR][1000 genomes]
rs1117522	0.93[EUR][1000 genomes]
rs1159788	0.93[EUR][1000 genomes]
rs11728286	0.93[EUR][1000 genomes]
rs11730379	0.94[EUR][1000 genomes]
rs11730944	0.90[EUR][1000 genomes]
rs11730958	0.92[EUR][1000 genomes]
rs11931217	0.89[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11935847	0.92[EUR][1000 genomes]
rs12499248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12500141	0.82[EUR][1000 genomes]
rs12505568	0.82[EUR][1000 genomes]
rs12510124	0.82[EUR][1000 genomes]
rs13104988	0.82[EUR][1000 genomes]
rs13107285	0.93[EUR][1000 genomes]
rs13112930	0.86[EUR][1000 genomes]
rs13114804	0.82[EUR][1000 genomes]
rs13125848	0.92[EUR][1000 genomes]
rs13147260	0.85[EUR][1000 genomes]
rs1381893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381894	0.86[EUR][1000 genomes]
rs1381895	0.86[EUR][1000 genomes]
rs1381897	0.85[EUR][1000 genomes]
rs1381899	0.93[EUR][1000 genomes]
rs1462943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462948	0.93[EUR][1000 genomes]
rs1462949	0.92[EUR][1000 genomes]
rs1462950	0.92[EUR][1000 genomes]
rs1462951	0.93[EUR][1000 genomes]
rs1462952	0.92[EUR][1000 genomes]
rs1599684	0.93[EUR][1000 genomes]
rs1599685	0.93[EUR][1000 genomes]
rs1599686	0.84[EUR][1000 genomes]
rs1870952	0.93[EUR][1000 genomes]
rs2054393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086004	0.93[EUR][1000 genomes]
rs2126625	0.94[EUR][1000 genomes]
rs233820	0.81[JPT][hapmap]
rs34663993	0.84[ASN][1000 genomes]
rs34835832	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699019	0.92[EUR][1000 genomes]
rs4699021	0.92[EUR][1000 genomes]
rs4699024	0.92[EUR][1000 genomes]
rs4699026	0.82[EUR][1000 genomes]
rs56202729	0.86[ASN][1000 genomes]
rs62329487	0.86[ASN][1000 genomes]
rs6814302	0.90[EUR][1000 genomes]
rs6835467	0.92[EUR][1000 genomes]
rs6843751	0.92[EUR][1000 genomes]
rs6844796	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6848517	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7436937	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7657947	0.92[EUR][1000 genomes]
rs7661593	0.93[EUR][1000 genomes]
rs7683109	0.92[EUR][1000 genomes]
rs962399	0.93[EUR][1000 genomes]
rs984055	0.92[EUR][1000 genomes]
rs985989	0.94[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103266800-103267800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr4:103266800-103267800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:103266800-103267800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:103267200-103268200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:103267200-103268200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:103267200-103269600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:103267200-103273000	Weak transcription	Colonic Mucosa	Colon
8	chr4:103267200-103273800	Weak transcription	Ovary	ovary
9	chr4:103267400-103267800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr4:103267400-103267800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr4:103267400-103267800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:103267400-103267800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:103267400-103267800	Enhancers	Hela-S3	cervix
14	chr4:103267400-103268000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr4:103267400-103268000	Enhancers	Fetal Thymus	thymus
16	chr4:103267400-103268400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr4:103267400-103271400	Weak transcription	K562	blood
18	chr4:103267600-103267800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr4:103267600-103267800	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:103267600-103268200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:103267600-103268200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:103267600-103268200	Enhancers	Dnd41	blood
23	chr4:103267600-103269600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:103267600-103270600	Weak transcription	Rectal Mucosa Donor 29	rectum

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