Variant report

Variant	rs56209126
Chromosome Location	chr4:120901616-120901617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1032817	1.00[ASN][1000 genomes]
rs11098555	0.89[EUR][1000 genomes]
rs11936056	0.89[EUR][1000 genomes]
rs12499151	0.89[EUR][1000 genomes]
rs17008457	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008785	0.84[EUR][1000 genomes]
rs28674650	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62321777	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321778	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321781	0.81[ASN][1000 genomes]
rs62321782	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62321788	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62321789	0.89[EUR][1000 genomes]
rs6833747	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842380	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120883400-120903400	Weak transcription	Left Ventricle	heart
2	chr4:120897600-120902000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:120898600-120905800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:120901400-120901800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:120901600-120901800	Enhancers	Fetal Lung	lung
6	chr4:120901600-120902600	Enhancers	Fetal Kidney	kidney
7	chr4:120901600-120902800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links