Variant report

Variant	rs62321781
Chromosome Location	chr4:120915842-120915843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1032817	0.81[ASN][1000 genomes]
rs17008457	0.81[ASN][1000 genomes]
rs56209126	0.81[ASN][1000 genomes]
rs62321777	0.81[ASN][1000 genomes]
rs62321778	0.81[ASN][1000 genomes]
rs6833747	0.81[ASN][1000 genomes]
rs6842380	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120914000-120917200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr4:120914000-120921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:120914600-120917200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr4:120914600-120917200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr4:120914600-120918400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:120914600-120918400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:120914800-120918200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:120914800-120918800	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr4:120914800-120919200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr4:120914800-120919200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:120915200-120917800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:120915200-120919200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:120915200-120919200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:120915400-120916400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:120915600-120916400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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